RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 NEMFO60524 1076 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 IBSPP21815 317 aaPredicted RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 TSR1Q2NL82 804 aaKnown RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 NYAP1Q6ZVC0 841 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 EXOC4Q96A65 974 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 CARD6Q9BX69 1037 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 PLEKHG2Q9H7P9 1386 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 KDM5DQ9BY66 1539 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 MYO5CQ9NQX4 1742 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 CDC42BPBQ9Y5S2 1711 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 PHACTR2O75167 634 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 SMC2O95347 1197 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 ZNF853P0CG23 659 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 HSP90B1P14625 803 aaKnown RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 LIG1P18858 919 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 EVCP57679 992 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 FOXR1Q6PIV2 292 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 CWC27Q6UX04 472 aaKnown RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 MMS22LQ6ZRQ5 1243 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 TMEM87AQ8NBN3 555 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 ORC3Q9UBD5 711 aaPredicted RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 PREX2Q70Z35 1606 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 KIF1CO43896 1103 aaKnown RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 SASH3O75995 380 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 TMPOP42166 694 aaKnown RBP4.94□□□□□ -1.62
VPS50-210ENST00000471188 FAM173BQ6P4H8 233 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 PLA2G4DQ86XP0 818 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 GIMAP7Q8NHV1 300 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 RNF217Q8TC41 542 aa4.94□□□□□ -1.62
VPS50-210ENST00000471188 ELP1O95163 1332 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 A2MP01023 1474 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 ZRANB2O95218 330 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS50-210ENST00000471188 HNRNPMP52272 730 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS50-210ENST00000471188 KRT85P78386 507 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 SETQ01105 290 aaPredicted RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 BIRC2Q13490 618 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 CAMK2BQ13554 666 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 FAM43BQ6ZT52 329 aaPredicted RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 REXO1L1PQ8IX06 675 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 ABCC11Q96J66 1382 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 PRDM15P57071 1507 aaPredicted RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 SMAPO00193 183 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 COL9A1P20849 921 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 CALRP27797 417 aaKnown RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 HSP90B2PQ58FF3 399 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 ISM2Q6H9L7 571 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 TYW1BQ6NUM6 668 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 CCDC83Q8IWF9 413 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 MRPL50Q8N5N7 158 aaKnown RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 KCNV2Q8TDN2 545 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 CCDC102AQ96A19 550 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 ZSWIM4Q9H7M6 989 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 TFIP11Q9UBB9 837 aaKnown RBP4.93□□□□□ -1.62
VPS50-210ENST00000471188 AGLP35573 1532 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 LMTK3Q96Q04 1460 aa4.93□□□□□ -1.62
VPS50-210ENST00000471188 TBC1D8O95759 1140 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 TPM1P09493 284 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 USP8P40818 1118 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 LIG3P49916 1009 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 DHX8Q14562 1220 aaKnown RBP4.92□□□□□ -1.62
VPS50-210ENST00000471188 TSGA10IPQ3SY00 556 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 C6orf132Q5T0Z8 1188 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 DCTPP1Q9H773 170 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 MED4Q9NPJ6 270 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 NEBLO76041 1014 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 GJB2P29033 226 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 MAP2K1Q02750 393 aaPredicted RBP4.92□□□□□ -1.62
VPS50-210ENST00000471188 ALDH1L2Q3SY69 923 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 CCDC30Q5VVM6 783 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 CC2D1AQ6P1N0 951 aaPredicted RBP4.92□□□□□ -1.62
VPS50-210ENST00000471188 GBP6Q6ZN66 633 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 TDRD7Q8NHU6 1098 aaKnown RBP4.92□□□□□ -1.62
VPS50-210ENST00000471188 PPP1R13BQ96KQ4 1090 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 SLC12A5Q9H2X9 1139 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 SLC24A3Q9HC58 644 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 PDE11AQ9HCR9 933 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 PLA2G2EQ9NZK7 142 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 RAI14Q9P0K7 980 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 VPS9D1Q9Y2B5 631 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 CCDC196A0A1B0GTZ2 297 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 H0YHG0 523 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 ERLIN2O94905 339 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 SCP2P22307 547 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 SFPQP23246 707 aaKnown RBP eCLIP4.92□□□□□ -1.62
VPS50-210ENST00000471188 CORO7P57737 925 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 TADA2BQ86TJ2 420 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 TTC6Q86TZ1 520 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 SPATA32Q96LK8 384 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 ESYT1Q9BSJ8 1104 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 L2HGDHQ9H9P8 463 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 KANK1Q14678 1352 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 RPAP1Q9BWH6 1393 aaPredicted RBP4.92□□□□□ -1.62
VPS50-210ENST00000471188 C3P01024 1663 aa4.92□□□□□ -1.62
VPS50-210ENST00000471188 INO80Q9ULG1 1556 aaPredicted RBP4.91□□□□□ -1.62
VPS50-210ENST00000471188 A0A087WWV3 80 aa4.91□□□□□ -1.62
VPS50-210ENST00000471188 H3BQF6 201 aa4.91□□□□□ -1.62
VPS50-210ENST00000471188 ATP8B1O43520 1251 aa4.91□□□□□ -1.62
VPS50-210ENST00000471188 RNF40O75150 1001 aa4.91□□□□□ -1.62
VPS50-210ENST00000471188 RDXP35241 583 aaKnown RBP4.91□□□□□ -1.62
VPS50-210ENST00000471188 SARNPP82979 210 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms