RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 DNMT3LQ9UJW3 386 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 USP3Q9Y6I4 520 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 TNRQ92752 1358 aa5.75□□□□□ -1.49
TMEM39A-204ENST00000468545 NOS1P29475 1434 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 CARNS1A5YM72 827 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 C21orf2O43822 256 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 MAN1A2O60476 641 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 PRMT3O60678 531 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 ATP2B4P23634 1241 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 PSMA6P60900 246 aaKnown RBP5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 TAS1R3Q7RTX0 852 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 ZNF295-AS1Q8N0V1 137 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 STAG2Q8N3U4 1231 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 SCG3Q8WXD2 468 aaKnown RBP5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 TRAIPQ9BWF2 469 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 NIFKQ9BYG3 293 aaKnown RBP5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 CXXC1Q9P0U4 656 aaPredicted RBP5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 SLAIN2Q9P270 581 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 CHMP3Q9Y3E7 222 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 ERVK-7P63135 1459 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 SPHKAPQ2M3C7 1700 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 CLTCL1P53675 1640 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 MADDQ8WXG6 1647 aa5.74□□□□□ -1.49
TMEM39A-204ENST00000468545 FER1L4A9Z1Z3 1794 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 ZC3H13Q5T200 1668 aaKnown RBP5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 RIMS1Q86UR5 1692 aaKnown RBP5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 ATAD2Q6PL18 1390 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 FIGNL2A6NMB9 653 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 FOXO3O43524 673 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 PPP1R12BO60237 982 aaPredicted RBP5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 LGR5O75473 907 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 PDIA4P13667 645 aaKnown RBP5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 TEAD4Q15561 434 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 C4orf17Q53FE4 359 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 WDR44Q5JSH3 913 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 TBCELQ5QJ74 424 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 NBPF10Q6P3W6 841 aaKnown RBP5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 POTEAQ6S8J7 498 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 PRICKLE2Q7Z3G6 844 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 PRIMPOLQ96LW4 560 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 CABP1Q9NZU7 370 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 TRPM2O94759 1503 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 ADGRF5Q8IZF2 1346 aa5.73□□□□□ -1.49
TMEM39A-204ENST00000468545 PREX1Q8TCU6 1659 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 SSFA2P28290 1259 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 PLA2G4AP47712 749 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 HIRAP54198 1017 aaPredicted RBP5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 POU4F2Q12837 409 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 NBPF1Q3BBV0 1214 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 LCE2CQ5TA81 110 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 TXNDC2Q86VQ3 553 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 THEMISQ8N1K5 641 aaPredicted RBP5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 C1orf216Q8TAB5 229 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 RPGRIP1LQ68CZ1 1315 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 SYNMO15061 1565 aa5.72□□□□□ -1.49
TMEM39A-204ENST00000468545 SERTM1A2A2V5 107 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 SOBPA7XYQ1 873 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 EML1O00423 815 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 BRD1O95696 1058 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 VEGFBP49765 207 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 FKBP5Q13451 457 aaPredicted RBP5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 ZDHHC1Q8WTX9 485 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 C2orf49Q9BVC5 232 aaPredicted RBP5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 CARD11Q9BXL7 1154 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 NXF1Q9UBU9 619 aaKnown RBP5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 EID1Q9Y6B2 187 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 C3P01024 1663 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 ADAMTSL3P82987 1691 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 SPATA31E1Q6ZUB1 1445 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 KIF1BO60333 1816 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 PTPRMP28827 1452 aa5.71□□□□□ -1.5
TMEM39A-204ENST00000468545 A0A1B0GTH6 734 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 WIPF1O43516 503 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 RHOQP17081 205 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 NOS2P35228 1153 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 TMEM132EQ6IEE7 984 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 PHLDB3Q6NSJ2 640 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 SLC16A10Q8TF71 515 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 COL26A1Q96A83 441 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 POLR3GLQ9BT43 218 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 TIMMDC1Q9NPL8 285 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 ZDHHC3Q9NYG2 299 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 STK26Q9P289 416 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 ZNF232Q9UNY5 417 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 RIMS2Q9UQ26 1411 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 SPATA31D1Q6ZQQ2 1576 aa5.7□□□□□ -1.5
TMEM39A-204ENST00000468545 MROH2AA6NES4 1674 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 ROCK2O75116 1388 aaKnown RBP5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 PTCD1O75127 700 aaKnown RBP5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 HSPA5P11021 654 aaKnown RBP5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 LTKP29376 864 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 PHKA2P46019 1235 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 HSPA2P54652 639 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 SH3PXD2AQ5TCZ1 1133 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 VTI1AQ96AJ9 217 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 DYRK1BQ9Y463 629 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 PIK3C2BO00750 1634 aa5.69□□□□□ -1.5
TMEM39A-204ENST00000468545 A2ML1A8K2U0 1454 aa5.69□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms