RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 HLFQ16534 295 aa15.57■□□□□ 0.08
SQSTM1-206ENST00000466342 C2orf69Q8N8R5 385 aa15.57■□□□□ 0.08
SQSTM1-206ENST00000466342 CRAMP1Q96RY5 1269 aa15.57■□□□□ 0.08
SQSTM1-206ENST00000466342 PRAMEF22A3QJZ6 481 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 TCERG1O14776 1098 aaKnown RBP15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 PPEF1O14829 653 aaPredicted RBP15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 NUTM1Q86Y26 1132 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 TRPM4Q8TD43 1214 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 RBM17Q96I25 401 aaKnown RBP15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 CSRNP1Q96S65 589 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 BCL2L13Q9BXK5 485 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 GBA2Q9HCG7 927 aaPredicted RBP15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 KDM3BQ7LBC6 1761 aa15.56■□□□□ 0.08
SQSTM1-206ENST00000466342 ABCC12Q96J65 1359 aa15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 NBPF26B4DH59 902 aa15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 ZNF157P51786 506 aaPredicted RBP15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 RIPK4P57078 832 aa15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 TNIP1Q15025 636 aa15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 NBPF10Q6P3W6 841 aaKnown RBP15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 MIER1Q8N108 512 aa15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 TMX4Q9H1E5 349 aaPredicted RBP15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 CNOT7Q9UIV1 285 aaKnown RBP15.55■□□□□ 0.08
SQSTM1-206ENST00000466342 RIC1Q4ADV7 1423 aa15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 LMOD3Q0VAK6 560 aa15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 DLK2Q6UY11 383 aa15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 SLC51AQ86UW1 340 aa15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 SUPT20HQ8NEM7 779 aa15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 RRP7AQ9Y3A4 280 aaKnown RBP15.54■□□□□ 0.08
SQSTM1-206ENST00000466342 H7C1D1 291 aa15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 APAF1O14727 1248 aa15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 REM2Q8IYK8 340 aaPredicted RBP15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 FAM9BQ8IZU0 186 aa15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 RTFDC1Q9BY42 306 aaPredicted RBP15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 MIS18AQ9NYP9 233 aa15.53■□□□□ 0.08
SQSTM1-206ENST00000466342 RAD17O75943 681 aa15.52■□□□□ 0.08
SQSTM1-206ENST00000466342 NEUROD2Q15784 382 aa15.52■□□□□ 0.08
SQSTM1-206ENST00000466342 ATP6V0A2Q9Y487 856 aa15.52■□□□□ 0.08
SQSTM1-206ENST00000466342 SLC10A3P09131 477 aa15.51■□□□□ 0.07
SQSTM1-206ENST00000466342 KRT26Q7Z3Y9 468 aa15.51■□□□□ 0.07
SQSTM1-206ENST00000466342 THUMPD2Q9BTF0 503 aaKnown RBP15.51■□□□□ 0.07
SQSTM1-206ENST00000466342 HDAC9Q9UKV0 1011 aa15.51■□□□□ 0.07
SQSTM1-206ENST00000466342 SHTN1A0MZ66 631 aa15.5■□□□□ 0.07
SQSTM1-206ENST00000466342 ERVV-1B6SEH8 477 aa15.5■□□□□ 0.07
SQSTM1-206ENST00000466342 EIF4A1P60842 406 aaKnown RBP15.5■□□□□ 0.07
SQSTM1-206ENST00000466342 TRIM35Q9UPQ4 493 aa15.5■□□□□ 0.07
SQSTM1-206ENST00000466342 KIAA2012Q0VF49 1180 aa15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 MICALL2Q8IY33 904 aa15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 DPF2Q92785 391 aa15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 DCPSQ96C86 337 aaKnown RBP15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 LAMB4A4D0S4 1761 aa15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 IBTKQ9P2D0 1353 aaPredicted RBP15.49■□□□□ 0.07
SQSTM1-206ENST00000466342 DPP8Q6V1X1 898 aaPredicted RBP15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 SAMD7Q7Z3H4 446 aa15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 MPNDQ8N594 471 aa15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 ZNF296Q8WUU4 475 aaPredicted RBP15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 BABAM1Q9NWV8 329 aa15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 MKI67P46013 3256 aaKnown RBP15.48■□□□□ 0.07
SQSTM1-206ENST00000466342 FXR1P51114 621 aaKnown RBP eCLIP15.47■□□□□ 0.07
SQSTM1-206ENST00000466342 SUSD4Q5VX71 490 aa15.47■□□□□ 0.07
SQSTM1-206ENST00000466342 FBXO46Q6PJ61 603 aaPredicted RBP15.47■□□□□ 0.07
SQSTM1-206ENST00000466342 SP8Q8IXZ3 490 aa15.47■□□□□ 0.07
SQSTM1-206ENST00000466342 NLRP3Q96P20 1036 aa15.47■□□□□ 0.07
SQSTM1-206ENST00000466342 YDJCA8MPS7 323 aa15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 ADM5C9JUS6 153 aa15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 TBC1D10BQ4KMP7 808 aaPredicted RBP15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 NCBP3Q53F19 620 aaKnown RBP15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 C3orf67Q6ZVT6 689 aa15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 NGEFQ8N5V2 710 aa15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 ZBTB12Q9Y330 459 aaPredicted RBP15.46■□□□□ 0.07
SQSTM1-206ENST00000466342 MAP3K15Q6ZN16 1313 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 UBN2Q6ZU65 1347 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 ANKRD36CQ5JPF3 1778 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 BBOX1O75936 387 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 GPTP24298 496 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 CCDC27Q2M243 656 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 TSPYL4Q9UJ04 414 aa15.45■□□□□ 0.06
SQSTM1-206ENST00000466342 LAMB2P55268 1798 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 TAF1P21675 1872 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 NTSR2O95665 410 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 TBC1D8O95759 1140 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 NOM1Q5C9Z4 860 aaKnown RBP15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 RASAL3Q86YV0 1011 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 ZNF34Q8IZ26 560 aa15.44■□□□□ 0.06
SQSTM1-206ENST00000466342 ABCC4O15439 1325 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 ERBB4Q15303 1308 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 EGFRP00533 1210 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 CALD1Q05682 793 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 SLC10A5Q5PT55 438 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 RBM26Q5T8P6 1007 aaKnown RBP15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 TTLL7Q6ZT98 887 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 PPP1R42Q7Z4L9 355 aa15.43■□□□□ 0.06
SQSTM1-206ENST00000466342 RBBP6Q7Z6E9 1792 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 GPR25O00155 361 aa15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 PSMD14O00487 310 aa15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 RPS12P25398 132 aaKnown RBP15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 KIF6Q6ZMV9 814 aa15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 SULF1Q8IWU6 871 aa15.42■□□□□ 0.06
SQSTM1-206ENST00000466342 WWC1Q8IX03 1113 aa15.41■□□□□ 0.06
SQSTM1-206ENST00000466342 PAPPA2Q9BXP8 1791 aa15.41■□□□□ 0.06
SQSTM1-206ENST00000466342 CHL1O00533 1208 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms