RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 PPEF1O14829 653 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-205ENST00000464493 CCT4P50991 539 aaKnown RBP18.34■□□□□ 0.53
SQSTM1-205ENST00000464493 CTSWP56202 376 aa18.34■□□□□ 0.53
SQSTM1-205ENST00000464493 GRAPQ13588 217 aa18.34■□□□□ 0.53
SQSTM1-205ENST00000464493 GRAPLQ8TC17 118 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-205ENST00000464493 CCDC93Q567U6 631 aa18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 OLFM4Q6UX06 510 aa18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 ATF7IPQ6VMQ6 1270 aa18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 TTLL11Q8NHH1 800 aa18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 CCDC85AQ96PX6 553 aaPredicted RBP18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 TAF1P21675 1872 aa18.33■□□□□ 0.52
SQSTM1-205ENST00000464493 MYH3P11055 1940 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 NFKBIEO00221 500 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 YY1P25490 414 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 CC2D2BQ6DHV5 1058 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 RTKN2Q8IZC4 609 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 CELF1Q92879 486 aaKnown RBP18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 TMX4Q9H1E5 349 aaPredicted RBP18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 SEC31BQ9NQW1 1179 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 ATP6V0A2Q9Y487 856 aa18.32■□□□□ 0.52
SQSTM1-205ENST00000464493 FER1L6Q2WGJ9 1857 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 UTYO14607 1347 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 NBPF7P0C2Y1 421 aaPredicted RBP18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 TRIM27P14373 513 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 RPS8P62241 208 aaKnown RBP18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 RASSF7Q02833 373 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 GRIPAP1Q4V328 841 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 ZKSCAN2Q63HK3 967 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 TMC4Q7Z404 712 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 SP8Q8IXZ3 490 aa18.31■□□□□ 0.52
SQSTM1-205ENST00000464493 CSF1RP07333 972 aa18.3■□□□□ 0.52
SQSTM1-205ENST00000464493 FOXO4P98177 505 aa18.3■□□□□ 0.52
SQSTM1-205ENST00000464493 USP44Q9H0E7 712 aa18.3■□□□□ 0.52
SQSTM1-205ENST00000464493 TAOK3Q9H2K8 898 aa18.3■□□□□ 0.52
SQSTM1-205ENST00000464493 GREM2Q9H772 168 aa18.3■□□□□ 0.52
SQSTM1-205ENST00000464493 SBF1O95248 1867 aa18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 LMNB1P20700 586 aa18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 C9orf131Q5VYM1 1079 aa18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 INTS3Q68E01 1043 aaKnown RBP18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 RCAN3Q9UKA8 241 aa18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 RTL9Q8NET4 1388 aa18.29■□□□□ 0.52
SQSTM1-205ENST00000464493 LTBP3Q9NS15 1303 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 FKBP4Q02790 459 aaKnown RBP eCLIP18.28■□□□□ 0.521e-6■■□□□ 13.4
SQSTM1-205ENST00000464493 EPHA10Q5JZY3 1008 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 SLC51AQ86UW1 340 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 CLUAP1Q96AJ1 413 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 SUCLG2Q96I99 432 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 CDC5LQ99459 802 aaKnown RBP18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 RNF181Q9P0P0 153 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 TNNQ9UQP3 1299 aa18.28■□□□□ 0.52
SQSTM1-205ENST00000464493 CCDC88AQ3V6T2 1871 aa18.27■□□□□ 0.52
SQSTM1-205ENST00000464493 PRELPP51888 382 aa18.27■□□□□ 0.52
SQSTM1-205ENST00000464493 LMBR1LQ6UX01 489 aa18.27■□□□□ 0.52
SQSTM1-205ENST00000464493 ANKRD18AQ8IVF6 992 aa18.27■□□□□ 0.52
SQSTM1-205ENST00000464493 KAZALD1Q96I82 304 aa18.27■□□□□ 0.52
SQSTM1-205ENST00000464493 SNED1Q8TER0 1413 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 COL4A1P02462 1669 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 ITGA6P23229 1130 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 FAM161AQ3B820 660 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 PSMD1Q99460 953 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 CHMP3Q9Y3E7 222 aa18.26■□□□□ 0.51
SQSTM1-205ENST00000464493 FTSJ3Q8IY81 847 aaKnown RBP18.25■□□□□ 0.51
SQSTM1-205ENST00000464493 MPNDQ8N594 471 aa18.25■□□□□ 0.51
SQSTM1-205ENST00000464493 ZNF277Q9NRM2 450 aaPredicted RBP18.25■□□□□ 0.51
SQSTM1-205ENST00000464493 ANKRD18BA2A2Z9 1011 aa18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 UBTFL1P0CB47 393 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 IFIT5Q13325 482 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 DPP8Q6V1X1 898 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 DZIP1LQ8IYY4 767 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 BICC1Q9H694 974 aaKnown RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 BSDC1Q9NW68 430 aaPredicted RBP18.24■□□□□ 0.51
SQSTM1-205ENST00000464493 IGHMBP2P38935 993 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-205ENST00000464493 CCDC57Q2TAC2 916 aa18.23■□□□□ 0.51
SQSTM1-205ENST00000464493 TMEM57Q8N5G2 664 aa18.23■□□□□ 0.51
SQSTM1-205ENST00000464493 NSFL1CQ9UNZ2 370 aaKnown RBP18.23■□□□□ 0.51
SQSTM1-205ENST00000464493 HDAC5Q9UQL6 1122 aa18.23■□□□□ 0.51
SQSTM1-205ENST00000464493 IARSP41252 1262 aaKnown RBP18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 GPSM2P81274 684 aa18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 RABL6Q3YEC7 729 aaPredicted RBP18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 SUPT20HQ8NEM7 779 aa18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 MPHOSPH8Q99549 860 aa18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 MEIS3Q99687 375 aa18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 RTFDC1Q9BY42 306 aaPredicted RBP18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 LRRC37AA6NMS7 1700 aa18.22■□□□□ 0.51
SQSTM1-205ENST00000464493 DICER1Q9UPY3 1922 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-205ENST00000464493 GNAI3P08754 354 aa18.21■□□□□ 0.51
SQSTM1-205ENST00000464493 MS4A1P11836 297 aa18.21■□□□□ 0.51
SQSTM1-205ENST00000464493 ANKRD44Q8N8A2 993 aa18.21■□□□□ 0.51
SQSTM1-205ENST00000464493 ZC3H4Q9UPT8 1303 aaKnown RBP18.21■□□□□ 0.51
SQSTM1-205ENST00000464493 RLBP1P12271 317 aa18.2■□□□□ 0.5
SQSTM1-205ENST00000464493 TAF7LQ5H9L4 462 aa18.2■□□□□ 0.5
SQSTM1-205ENST00000464493 VPS33BQ9H267 617 aa18.2■□□□□ 0.5
SQSTM1-205ENST00000464493 ANKIB1Q9P2G1 1089 aa18.2■□□□□ 0.5
SQSTM1-205ENST00000464493 MINPP1Q9UNW1 487 aa18.2■□□□□ 0.5
SQSTM1-205ENST00000464493 SPEF2Q9C093 1822 aa18.19■□□□□ 0.5
SQSTM1-205ENST00000464493 PLIN1O60240 522 aa18.19■□□□□ 0.5
SQSTM1-205ENST00000464493 ITPRIPQ8IWB1 547 aa18.19■□□□□ 0.5
SQSTM1-205ENST00000464493 ZNF784Q8NCA9 323 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-205ENST00000464493 ZNF594Q96JF6 807 aaPredicted RBP18.19■□□□□ 0.5
SQSTM1-205ENST00000464493 PODXL2Q9NZ53 605 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms