RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 USP26Q9BXU7 913 aa18.11■□□□□ 0.49
USP4-203ENST00000415188 NMRK2Q9NPI5 230 aa18.11■□□□□ 0.49
USP4-203ENST00000415188 SALL3Q9BXA9 1300 aa18.11■□□□□ 0.49
USP4-203ENST00000415188 DDX11L8A8MPP1 907 aa18.1■□□□□ 0.49
USP4-203ENST00000415188 SMARCA5O60264 1052 aaPredicted RBP18.1■□□□□ 0.49
USP4-203ENST00000415188 UBTFL1P0CB47 393 aaPredicted RBP18.1■□□□□ 0.49
USP4-203ENST00000415188 CNBD1Q8NA66 436 aa18.1■□□□□ 0.49
USP4-203ENST00000415188 OTUD7AQ8TE49 926 aaPredicted RBP18.1■□□□□ 0.49
USP4-203ENST00000415188 ZNF622Q969S3 477 aaKnown RBP eCLIP18.1■□□□□ 0.49
USP4-203ENST00000415188 RAB11FIP3O75154 756 aa18.09■□□□□ 0.49
USP4-203ENST00000415188 PDE6BP35913 854 aa18.09■□□□□ 0.49
USP4-203ENST00000415188 PRELPP51888 382 aa18.09■□□□□ 0.49
USP4-203ENST00000415188 COL11A2P13942 1736 aaPredicted RBP18.09■□□□□ 0.49
USP4-203ENST00000415188 NPHP1O15259 732 aa18.08■□□□□ 0.49
USP4-203ENST00000415188 USP44Q9H0E7 712 aa18.08■□□□□ 0.49
USP4-203ENST00000415188 STAP2Q9UGK3 403 aa18.08■□□□□ 0.49
USP4-203ENST00000415188 LAMB4A4D0S4 1761 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 ERC2O15083 957 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 SBF1O95248 1867 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 ST5P78524 1137 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 CLEC4GQ6UXB4 293 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 IL27Q8NEV9 243 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 SSH3Q8TE77 659 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 ZNF219Q9P2Y4 722 aaPredicted RBP18.07■□□□□ 0.48
USP4-203ENST00000415188 HDAC5Q9UQL6 1122 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 CEP350Q5VT06 3117 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 HLFQ16534 295 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 NBPF5PQ86XG9 351 aaPredicted RBP18.07■□□□□ 0.48
USP4-203ENST00000415188 SPRYD3Q8NCJ5 442 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 ZNF652Q9Y2D9 606 aa18.07■□□□□ 0.48
USP4-203ENST00000415188 LRRFIP2Q9Y608 721 aaKnown RBP18.07■□□□□ 0.48
USP4-203ENST00000415188 NFKBIEO00221 500 aa18.06■□□□□ 0.48
USP4-203ENST00000415188 MX1P20591 662 aa18.06■□□□□ 0.48
USP4-203ENST00000415188 POLA2Q14181 598 aa18.06■□□□□ 0.48
USP4-203ENST00000415188 DNAAF4Q8WXU2 420 aa18.06■□□□□ 0.48
USP4-203ENST00000415188 NECTIN2Q92692 538 aa18.06■□□□□ 0.48
USP4-203ENST00000415188 NIP7Q9Y221 180 aaKnown RBP eCLIP18.06■□□□□ 0.48
USP4-203ENST00000415188 FAM177BA6PVY3 158 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 APBB1O00213 710 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 EPB41L2O43491 1005 aaKnown RBP18.05■□□□□ 0.48
USP4-203ENST00000415188 C21orf2O43822 256 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 HSPA6P17066 643 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 RAB3GAP1Q15042 981 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 L1TD1Q5T7N2 865 aaKnown RBP18.05■□□□□ 0.48
USP4-203ENST00000415188 GBP4Q96PP9 640 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 EXOC6BQ9Y2D4 811 aa18.05■□□□□ 0.48
USP4-203ENST00000415188 PNMA6EA0A0J9YXQ4 647 aa18.04■□□□□ 0.48
USP4-203ENST00000415188 HSP90AA1P07900 732 aaKnown RBP18.04■□□□□ 0.48
USP4-203ENST00000415188 LMNB1P20700 586 aa18.04■□□□□ 0.48
USP4-203ENST00000415188 HSP90AB4PQ58FF6 505 aa18.04■□□□□ 0.48
USP4-203ENST00000415188 DBF4Q9UBU7 674 aaPredicted RBP18.04■□□□□ 0.48
USP4-203ENST00000415188 ALDH1L1O75891 902 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 TOMM70O94826 608 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 SRGNP10124 158 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 MYL6BP14649 208 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 BEND3Q5T5X7 828 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 TTLL7Q6ZT98 887 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 PHAXQ9H814 394 aaKnown RBP18.03■□□□□ 0.48
USP4-203ENST00000415188 CHPF2Q9P2E5 772 aa18.03■□□□□ 0.48
USP4-203ENST00000415188 AK9Q5TCS8 1911 aa18.02■□□□□ 0.48
USP4-203ENST00000415188 ST18O60284 1047 aa18.02■□□□□ 0.48
USP4-203ENST00000415188 EIF2S2P20042 333 aaKnown RBP18.02■□□□□ 0.48
USP4-203ENST00000415188 STYK1Q6J9G0 422 aa18.02■□□□□ 0.48
USP4-203ENST00000415188 RRAGCQ9HB90 399 aa18.02■□□□□ 0.48
USP4-203ENST00000415188 RGL2O15211 777 aa18.01■□□□□ 0.47
USP4-203ENST00000415188 PRPF40BQ6NWY9 871 aaKnown RBP18.01■□□□□ 0.47
USP4-203ENST00000415188 CNKSR1Q969H4 720 aa18.01■□□□□ 0.47
USP4-203ENST00000415188 MASTLQ96GX5 879 aa18.01■□□□□ 0.47
USP4-203ENST00000415188 CD2BP2O95400 341 aaKnown RBP18.01■□□□□ 0.47
USP4-203ENST00000415188 TPTE2Q6XPS3 522 aa18.01■□□□□ 0.47
USP4-203ENST00000415188 CLEC17AQ6ZS10 378 aa18.01■□□□□ 0.47
USP4-203ENST00000415188 SLX4Q8IY92 1834 aa18■□□□□ 0.47
USP4-203ENST00000415188 MAP3K15Q6ZN16 1313 aa18■□□□□ 0.47
USP4-203ENST00000415188 MCCP23508 829 aa18■□□□□ 0.47
USP4-203ENST00000415188 MTX1Q13505 466 aa18■□□□□ 0.47
USP4-203ENST00000415188 KIF6Q6ZMV9 814 aa18■□□□□ 0.47
USP4-203ENST00000415188 IL17RAQ96F46 866 aa18■□□□□ 0.47
USP4-203ENST00000415188 ESYT1Q9BSJ8 1104 aa18■□□□□ 0.47
USP4-203ENST00000415188 ZBTB3Q9H5J0 574 aa18■□□□□ 0.47
USP4-203ENST00000415188 HYPKQ9NX55 129 aa18■□□□□ 0.47
USP4-203ENST00000415188 ERVV-1B6SEH8 477 aa17.99■□□□□ 0.47
USP4-203ENST00000415188 ANAPC15P60006 121 aa17.99■□□□□ 0.47
USP4-203ENST00000415188 SKOR2Q2VWA4 1001 aaPredicted RBP17.99■□□□□ 0.47
USP4-203ENST00000415188 PPP1R42Q7Z4L9 355 aa17.99■□□□□ 0.47
USP4-203ENST00000415188 TNPO1Q92973 898 aaKnown RBP17.99■□□□□ 0.47
USP4-203ENST00000415188 KIF1BPQ96EK5 621 aa17.99■□□□□ 0.47
USP4-203ENST00000415188 CWC22Q9HCG8 908 aaKnown RBP17.99■□□□□ 0.47
USP4-203ENST00000415188 ISY1Q9ULR0 285 aaKnown RBP17.99■□□□□ 0.47
USP4-203ENST00000415188 CACNA1SQ13698 1873 aa17.99■□□□□ 0.47
USP4-203ENST00000415188 ZC3H4Q9UPT8 1303 aaKnown RBP17.98■□□□□ 0.47
USP4-203ENST00000415188 CCDC88AQ3V6T2 1871 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 KLRG2A4D1S0 409 aaPredicted RBP17.98■□□□□ 0.47
USP4-203ENST00000415188 PI4KAP2A4QPH2 592 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 TRAK2O60296 914 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 MCM2P49736 904 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 NUTM1Q86Y26 1132 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 PI4KAP1Q8N8J0 262 aa17.98■□□□□ 0.47
USP4-203ENST00000415188 TIAM2Q8IVF5 1701 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 ANXA1P04083 346 aa17.97■□□□□ 0.47
USP4-203ENST00000415188 NPR1P16066 1061 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms