RNA–Protein interactions for RNA: ENST00000409783.6

PTCD3-203, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 587 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-203ENST00000409783 YTHDC1Q96MU7 727 aaKnown RBP28.33■■■□□ 2.13
PTCD3-203ENST00000409783 NFKBIEO00221 500 aa28.32■■■□□ 2.12
PTCD3-203ENST00000409783 CTSWP56202 376 aa28.32■■■□□ 2.12
PTCD3-203ENST00000409783 DDX46Q7L014 1031 aaKnown RBP28.32■■■□□ 2.12
PTCD3-203ENST00000409783 UTYO14607 1347 aa28.32■■■□□ 2.12
PTCD3-203ENST00000409783 GRAPQ13588 217 aa28.31■■■□□ 2.12
PTCD3-203ENST00000409783 TTLL11Q8NHH1 800 aa28.31■■■□□ 2.12
PTCD3-203ENST00000409783 GRAPLQ8TC17 118 aaPredicted RBP28.31■■■□□ 2.12
PTCD3-203ENST00000409783 TNNQ9UQP3 1299 aa28.31■■■□□ 2.12
PTCD3-203ENST00000409783 TRIM27P14373 513 aa28.3■■■□□ 2.12
PTCD3-203ENST00000409783 PRELPP51888 382 aa28.3■■■□□ 2.12
PTCD3-203ENST00000409783 CELF1Q92879 486 aaKnown RBP28.3■■■□□ 2.12
PTCD3-203ENST00000409783 CCDC88AQ3V6T2 1871 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 PPEF1O14829 653 aaPredicted RBP28.29■■■□□ 2.12
PTCD3-203ENST00000409783 IPO8O15397 1037 aaKnown RBP28.29■■■□□ 2.12
PTCD3-203ENST00000409783 BBOX1O75936 387 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 RASSF7Q02833 373 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 CCDC152Q4G0S7 254 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 SOGA3Q5TF21 947 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 ATF7IPQ6VMQ6 1270 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 FRAT1Q92837 279 aaPredicted RBP28.29■■■□□ 2.12
PTCD3-203ENST00000409783 SEC31BQ9NQW1 1179 aa28.29■■■□□ 2.12
PTCD3-203ENST00000409783 C9orf78Q9NZ63 289 aaPredicted RBP28.29■■■□□ 2.12
PTCD3-203ENST00000409783 CSF1RP07333 972 aa28.28■■■□□ 2.12
PTCD3-203ENST00000409783 NBPF7P0C2Y1 421 aaPredicted RBP28.28■■■□□ 2.12
PTCD3-203ENST00000409783 FOXO4P98177 505 aa28.28■■■□□ 2.12
PTCD3-203ENST00000409783 CCDC93Q567U6 631 aa28.28■■■□□ 2.12
PTCD3-203ENST00000409783 USP44Q9H0E7 712 aa28.28■■■□□ 2.12
PTCD3-203ENST00000409783 LRRC37AA6NMS7 1700 aa28.28■■■□□ 2.12
PTCD3-203ENST00000409783 RTL9Q8NET4 1388 aa28.27■■■□□ 2.12
PTCD3-203ENST00000409783 CCT4P50991 539 aaKnown RBP28.27■■■□□ 2.12
PTCD3-203ENST00000409783 EPHA10Q5JZY3 1008 aa28.27■■■□□ 2.12
PTCD3-203ENST00000409783 KAZALD1Q96I82 304 aa28.27■■■□□ 2.12
PTCD3-203ENST00000409783 CCDC85AQ96PX6 553 aaPredicted RBP28.27■■■□□ 2.12
PTCD3-203ENST00000409783 ATP6V0A2Q9Y487 856 aa28.27■■■□□ 2.12
PTCD3-203ENST00000409783 LTBP3Q9NS15 1303 aa28.26■■■□□ 2.11
PTCD3-203ENST00000409783 INTS3Q68E01 1043 aaKnown RBP28.26■■■□□ 2.11
PTCD3-203ENST00000409783 CC2D2BQ6DHV5 1058 aa28.26■■■□□ 2.11
PTCD3-203ENST00000409783 ZKSCAN2Q63HK3 967 aa28.25■■■□□ 2.11
PTCD3-203ENST00000409783 GREM2Q9H772 168 aa28.25■■■□□ 2.11
PTCD3-203ENST00000409783 SP8Q8IXZ3 490 aa28.24■■■□□ 2.11
PTCD3-203ENST00000409783 SUCLG2Q96I99 432 aa28.24■■■□□ 2.11
PTCD3-203ENST00000409783 RPS8P62241 208 aaKnown RBP28.23■■■□□ 2.11
PTCD3-203ENST00000409783 RTKN2Q8IZC4 609 aa28.23■■■□□ 2.11
PTCD3-203ENST00000409783 TAOK3Q9H2K8 898 aa28.23■■■□□ 2.11
PTCD3-203ENST00000409783 RCAN3Q9UKA8 241 aa28.23■■■□□ 2.11
PTCD3-203ENST00000409783 DICER1Q9UPY3 1922 aaKnown RBP28.23■■■□□ 2.11
PTCD3-203ENST00000409783 YY1P25490 414 aa28.22■■■□□ 2.11
PTCD3-203ENST00000409783 TMC4Q7Z404 712 aa28.22■■■□□ 2.11
PTCD3-203ENST00000409783 SPEF2Q9C093 1822 aa28.21■■■□□ 2.11
PTCD3-203ENST00000409783 FKBP4Q02790 459 aaKnown RBP eCLIP28.21■■■□□ 2.11
PTCD3-203ENST00000409783 C9orf131Q5VYM1 1079 aa28.21■■■□□ 2.11
PTCD3-203ENST00000409783 CLUAP1Q96AJ1 413 aa28.21■■■□□ 2.11
PTCD3-203ENST00000409783 LMNB1P20700 586 aa28.2■■■□□ 2.1
PTCD3-203ENST00000409783 FAM161AQ3B820 660 aa28.2■■■□□ 2.1
PTCD3-203ENST00000409783 GRIPAP1Q4V328 841 aa28.2■■■□□ 2.1
PTCD3-203ENST00000409783 PSMD1Q99460 953 aa28.2■■■□□ 2.1
PTCD3-203ENST00000409783 LTBP1Q14766 1721 aa28.2■■■□□ 2.1
PTCD3-203ENST00000409783 LMBR1LQ6UX01 489 aa28.19■■■□□ 2.1
PTCD3-203ENST00000409783 ITGA6P23229 1130 aa28.18■■■□□ 2.1
PTCD3-203ENST00000409783 RNF181Q9P0P0 153 aa28.18■■■□□ 2.1
PTCD3-203ENST00000409783 DUOX1Q9NRD9 1551 aa28.18■■■□□ 2.1
PTCD3-203ENST00000409783 RLBP1P12271 317 aa28.17■■■□□ 2.1
PTCD3-203ENST00000409783 RABL6Q3YEC7 729 aaPredicted RBP28.17■■■□□ 2.1
PTCD3-203ENST00000409783 ANKRD18AQ8IVF6 992 aa28.17■■■□□ 2.1
PTCD3-203ENST00000409783 TMEM57Q8N5G2 664 aa28.17■■■□□ 2.1
PTCD3-203ENST00000409783 ANKRD44Q8N8A2 993 aa28.17■■■□□ 2.1
PTCD3-203ENST00000409783 CDC5LQ99459 802 aaKnown RBP28.17■■■□□ 2.1
PTCD3-203ENST00000409783 BICC1Q9H694 974 aaKnown RBP28.17■■■□□ 2.1
PTCD3-203ENST00000409783 TIAM2Q8IVF5 1701 aa28.16■■■□□ 2.1
PTCD3-203ENST00000409783 MEIS3Q99687 375 aa28.16■■■□□ 2.1
PTCD3-203ENST00000409783 RTFDC1Q9BY42 306 aaPredicted RBP28.16■■■□□ 2.1
PTCD3-203ENST00000409783 ZNF277Q9NRM2 450 aaPredicted RBP28.15■■■□□ 2.1
PTCD3-203ENST00000409783 DZIP1LQ8IYY4 767 aaKnown RBP28.14■■■□□ 2.1
PTCD3-203ENST00000409783 MPNDQ8N594 471 aa28.14■■■□□ 2.1
PTCD3-203ENST00000409783 TMX4Q9H1E5 349 aaPredicted RBP28.13■■■□□ 2.09
PTCD3-203ENST00000409783 BSDC1Q9NW68 430 aaPredicted RBP28.13■■■□□ 2.09
PTCD3-203ENST00000409783 ANKRD18BA2A2Z9 1011 aa28.12■■■□□ 2.09
PTCD3-203ENST00000409783 UBTFL1P0CB47 393 aaPredicted RBP28.12■■■□□ 2.09
PTCD3-203ENST00000409783 GPSM2P81274 684 aa28.12■■■□□ 2.09
PTCD3-203ENST00000409783 DPP8Q6V1X1 898 aaPredicted RBP28.12■■■□□ 2.09
PTCD3-203ENST00000409783 COL4A5P29400 1685 aa28.12■■■□□ 2.09
PTCD3-203ENST00000409783 IARSP41252 1262 aaKnown RBP28.11■■■□□ 2.09
PTCD3-203ENST00000409783 IFIT5Q13325 482 aaKnown RBP28.11■■■□□ 2.09
PTCD3-203ENST00000409783 CHMP3Q9Y3E7 222 aa28.11■■■□□ 2.09
PTCD3-203ENST00000409783 PODXL2Q9NZ53 605 aa28.1■■■□□ 2.09
PTCD3-203ENST00000409783 MINPP1Q9UNW1 487 aa28.1■■■□□ 2.09
PTCD3-203ENST00000409783 NSFL1CQ9UNZ2 370 aaKnown RBP28.1■■■□□ 2.09
PTCD3-203ENST00000409783 PLIN1O60240 522 aa28.09■■■□□ 2.09
PTCD3-203ENST00000409783 IGHMBP2P38935 993 aaKnown RBP28.09■■■□□ 2.09
PTCD3-203ENST00000409783 FTSJ3Q8IY81 847 aaKnown RBP28.09■■■□□ 2.09
PTCD3-203ENST00000409783 ZC3H4Q9UPT8 1303 aaKnown RBP28.09■■■□□ 2.09
PTCD3-203ENST00000409783 A0A1B0GUL6 1792 aa28.09■■■□□ 2.09
PTCD3-203ENST00000409783 GNAI3P08754 354 aa28.08■■■□□ 2.09
PTCD3-203ENST00000409783 CCDC57Q2TAC2 916 aa28.08■■■□□ 2.09
PTCD3-203ENST00000409783 PANK1Q8TE04 598 aa28.08■■■□□ 2.09
PTCD3-203ENST00000409783 ZNF594Q96JF6 807 aaPredicted RBP28.08■■■□□ 2.09
PTCD3-203ENST00000409783 POLLQ9UGP5 575 aa28.08■■■□□ 2.09
PTCD3-203ENST00000409783 LRRFIP2Q9Y608 721 aaKnown RBP28.08■■■□□ 2.09
PTCD3-203ENST00000409783 ZNF784Q8NCA9 323 aaPredicted RBP28.07■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms