RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 STRN4Q9NRL3 753 aa13.96□□□□□ -0.17
HMGB1-206ENST00000405805 SIRT1Q96EB6 747 aa13.96□□□□□ -0.18
HMGB1-206ENST00000405805 AATKQ6ZMQ8 1374 aa13.96□□□□□ -0.18
HMGB1-206ENST00000405805 GCP02774 474 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 RRP12Q5JTH9 1297 aaKnown RBP13.95□□□□□ -0.18
HMGB1-206ENST00000405805 OTUD7BQ6GQQ9 843 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 Q6ZUG5 572 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 CCAR1Q8IX12 1150 aaKnown RBP13.95□□□□□ -0.18
HMGB1-206ENST00000405805 PRIMPOLQ96LW4 560 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 NEK1Q96PY6 1258 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 IQSEC2Q5JU85 1478 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 A0A087WZG4 1122 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 PRAMEF22A3QJZ6 481 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 EVA1CP58658 441 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 TTC6Q86TZ1 520 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 CCDC144CPQ8IYA2 1237 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 PLCD4Q9BRC7 762 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 BICC1Q9H694 974 aaKnown RBP13.95□□□□□ -0.18
HMGB1-206ENST00000405805 NCOA5Q9HCD5 579 aaKnown RBP13.95□□□□□ -0.18
HMGB1-206ENST00000405805 CFAP45Q9UL16 551 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 SBNO1A3KN83 1393 aa13.95□□□□□ -0.18
HMGB1-206ENST00000405805 TATP17735 454 aaPredicted RBP13.94□□□□□ -0.18
HMGB1-206ENST00000405805 COPS6Q7L5N1 327 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 TPCN1Q9ULQ1 816 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 USP16Q9Y5T5 823 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 LRRC7Q96NW7 1537 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 SERPINC1P01008 464 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 TRDNQ13061 729 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 BCL2L12Q9HB09 334 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 PPLO60437 1756 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 CYP2E1P05181 493 aaPredicted RBP13.94□□□□□ -0.18
HMGB1-206ENST00000405805 MYRIPQ8NFW9 859 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 SECISBP2LQ93073 1101 aaKnown RBP13.94□□□□□ -0.18
HMGB1-206ENST00000405805 SEC62Q99442 399 aaKnown RBP13.94□□□□□ -0.18
HMGB1-206ENST00000405805 MTMR6Q9Y217 621 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 CCDC171Q6TFL3 1326 aa13.94□□□□□ -0.18
HMGB1-206ENST00000405805 CNPY4Q8N129 248 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 XAGE3Q8WTP9 111 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 USP6P35125 1406 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 CEP57L1Q8IYX8 460 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 GRM8O00222 908 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 SKILP12757 684 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 APOBRQ0VD83 1088 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 CUL4AQ13619 759 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 PROSER3Q2NL68 480 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 CBX8Q9HC52 389 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 CD163L1Q9NR16 1453 aa13.93□□□□□ -0.18
HMGB1-206ENST00000405805 NOL10Q9BSC4 688 aaKnown RBP13.93□□□□□ -0.18
HMGB1-206ENST00000405805 NAT10Q9H0A0 1025 aaKnown RBP13.93□□□□□ -0.18
HMGB1-206ENST00000405805 PTCH1Q13635 1447 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 CPS1P31327 1500 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 CLGNO14967 610 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 TDO2P48775 406 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 AK7Q96M32 723 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 TLR7Q9NYK1 1049 aaKnown RBP13.92□□□□□ -0.18
HMGB1-206ENST00000405805 ZBTB3Q9H5J0 574 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 RSPH14Q9UHP6 348 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 A0A0D9SFI3 127 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 HSP90B2PQ58FF3 399 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 MEX3CQ5U5Q3 659 aaKnown RBP13.92□□□□□ -0.18
HMGB1-206ENST00000405805 SSH3Q8TE77 659 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 EAF2Q96CJ1 260 aaPredicted RBP13.92□□□□□ -0.18
HMGB1-206ENST00000405805 DRC1Q96MC2 740 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 DDX19AQ9NUU7 478 aaKnown RBP13.92□□□□□ -0.18
HMGB1-206ENST00000405805 MAP3K5Q99683 1374 aa13.92□□□□□ -0.18
HMGB1-206ENST00000405805 SLC27A2O14975 620 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 VPS53Q5VIR6 699 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 AOPEPQ8N6M6 819 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 IP6K1Q92551 441 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 ZNF396Q96N95 335 aaPredicted RBP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 FTOQ9C0B1 505 aaKnown RBP eCLIP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 NR1I2O75469 434 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 NAA30Q147X3 362 aaPredicted RBP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 TMC6Q7Z403 805 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 PDLIM2Q96JY6 352 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 MTMR7Q9Y216 660 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 IBTKQ9P2D0 1353 aaPredicted RBP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 TIMM10P62072 90 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 TRIM29Q14134 588 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 RASSF8Q8NHQ8 419 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 LSG1Q9H089 658 aaKnown RBP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 CENPHQ9H3R5 247 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 OSBPL3Q9H4L5 887 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 HYPKQ9NX55 129 aa13.91□□□□□ -0.18
HMGB1-206ENST00000405805 ZC3H13Q5T200 1668 aaKnown RBP13.91□□□□□ -0.18
HMGB1-206ENST00000405805 CFAP100Q494V2 611 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 CEP135Q66GS9 1140 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 TOM1L2Q6ZVM7 507 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 SUCLG2Q96I99 432 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 CLTCQ00610 1675 aaKnown RBP13.9□□□□□ -0.18
HMGB1-206ENST00000405805 CPSF1Q10570 1443 aaKnown RBP13.9□□□□□ -0.18
HMGB1-206ENST00000405805 MARCKSP29966 332 aaPredicted RBP13.9□□□□□ -0.18
HMGB1-206ENST00000405805 KRT222Q8N1A0 295 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 GIMAP7Q8NHV1 300 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 ZSWIM4Q9H7M6 989 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 PLEKHG1Q9ULL1 1385 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 CABP4P57796 275 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 CPLX2Q6PUV4 134 aaKnown RBP13.9□□□□□ -0.18
HMGB1-206ENST00000405805 KSR2Q6VAB6 950 aa13.9□□□□□ -0.18
HMGB1-206ENST00000405805 PRDM11Q9NQV5 511 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms