RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 AMIGO3Q86WK7 504 aa17.68■□□□□ 0.42
SKA1-202ENST00000398452 SUCLG2Q96I99 432 aa17.68■□□□□ 0.42
SKA1-202ENST00000398452 CHMP3Q9Y3E7 222 aa17.68■□□□□ 0.42
SKA1-202ENST00000398452 TBC1D9BQ66K14 1250 aa17.67■□□□□ 0.42
SKA1-202ENST00000398452 TPTE2Q6XPS3 522 aa17.67■□□□□ 0.42
SKA1-202ENST00000398452 NBPF5PQ86XG9 351 aaPredicted RBP17.67■□□□□ 0.42
SKA1-202ENST00000398452 NLGN1Q8N2Q7 840 aa17.67■□□□□ 0.42
SKA1-202ENST00000398452 FAM89AQ96GI7 184 aa17.67■□□□□ 0.42
SKA1-202ENST00000398452 CDHR2Q9BYE9 1310 aa17.67■□□□□ 0.42
SKA1-202ENST00000398452 SRGAP3O43295 1099 aa17.66■□□□□ 0.42
SKA1-202ENST00000398452 SUSD4Q5VX71 490 aa17.66■□□□□ 0.42
SKA1-202ENST00000398452 JARID2Q92833 1246 aaPredicted RBP17.66■□□□□ 0.42
SKA1-202ENST00000398452 GCC1Q96CN9 775 aa17.66■□□□□ 0.42
SKA1-202ENST00000398452 BICC1Q9H694 974 aaKnown RBP17.66■□□□□ 0.42
SKA1-202ENST00000398452 UBN2Q6ZU65 1347 aa17.66■□□□□ 0.42
SKA1-202ENST00000398452 NUP98P52948 1817 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 UBR3Q6ZT12 1888 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 IRS4O14654 1257 aaPredicted RBP17.65■□□□□ 0.42
SKA1-202ENST00000398452 GYS1P13807 737 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 BCL2L12Q9HB09 334 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 ANKRD36CQ5JPF3 1778 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 BCORQ6W2J9 1755 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 CARMIL3Q8ND23 1372 aa17.65■□□□□ 0.42
SKA1-202ENST00000398452 SCN7AQ01118 1682 aa17.64■□□□□ 0.42
SKA1-202ENST00000398452 PDE8AO60658 829 aa17.64■□□□□ 0.41
SKA1-202ENST00000398452 ZNF784Q8NCA9 323 aaPredicted RBP17.64■□□□□ 0.41
SKA1-202ENST00000398452 WWC3Q9ULE0 1092 aa17.64■□□□□ 0.41
SKA1-202ENST00000398452 IGHDP01880 384 aa17.63■□□□□ 0.41
SKA1-202ENST00000398452 OS9Q13438 667 aaPredicted RBP17.63■□□□□ 0.41
SKA1-202ENST00000398452 HSP90AB4PQ58FF6 505 aa17.63■□□□□ 0.41
SKA1-202ENST00000398452 PLA2G12BQ9BX93 195 aa17.63■□□□□ 0.41
SKA1-202ENST00000398452 NTSR2O95665 410 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 CASP7P55210 303 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 ST5P78524 1137 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 MTX1Q13505 466 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 NFIXQ14938 502 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 CCDC57Q2TAC2 916 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 TAF7LQ5H9L4 462 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 LMBR1LQ6UX01 489 aa17.62■□□□□ 0.41
SKA1-202ENST00000398452 CHD4Q14839 1912 aa17.61■□□□□ 0.41
SKA1-202ENST00000398452 CNBD1Q8NA66 436 aa17.61■□□□□ 0.41
SKA1-202ENST00000398452 SSH3Q8TE77 659 aa17.61■□□□□ 0.41
SKA1-202ENST00000398452 PARP3Q9Y6F1 533 aa17.61■□□□□ 0.41
SKA1-202ENST00000398452 C4AP0C0L4 1744 aa17.61■□□□□ 0.41
SKA1-202ENST00000398452 PNMA6EA0A0J9YXQ4 647 aa17.6■□□□□ 0.41
SKA1-202ENST00000398452 SPDYE4A6NLX3 237 aa17.6■□□□□ 0.41
SKA1-202ENST00000398452 SURF6O75683 361 aaKnown RBP17.6■□□□□ 0.41
SKA1-202ENST00000398452 CTSWP56202 376 aa17.6■□□□□ 0.41
SKA1-202ENST00000398452 G3BP1Q13283 466 aaKnown RBP eCLIP17.6■□□□□ 0.41
SKA1-202ENST00000398452 RABL6Q3YEC7 729 aaPredicted RBP17.6■□□□□ 0.41
SKA1-202ENST00000398452 NUTM1Q86Y26 1132 aa17.6■□□□□ 0.41
SKA1-202ENST00000398452 COL24A1Q17RW2 1714 aa17.6■□□□□ 0.41
SKA1-202ENST00000398452 KDM2BQ8NHM5 1336 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 SERPINB2P05120 415 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 YBX3P16989 372 aaKnown RBP eCLIP17.59■□□□□ 0.41
SKA1-202ENST00000398452 IFIT5Q13325 482 aaKnown RBP17.59■□□□□ 0.41
SKA1-202ENST00000398452 CCDC152Q4G0S7 254 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 SIRT2Q8IXJ6 389 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 NLRP3Q96P20 1036 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 DCTPP1Q9H773 170 aa17.59■□□□□ 0.41
SKA1-202ENST00000398452 UTRNP46939 3433 aa17.58■□□□□ 0.41
SKA1-202ENST00000398452 ANKRD18BA2A2Z9 1011 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 RAB11FIP3O75154 756 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 HCLS1P14317 486 aaPredicted RBP17.58■□□□□ 0.4
SKA1-202ENST00000398452 FOXO4P98177 505 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 ERFEQ4G0M1 354 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 EPHA10Q5JZY3 1008 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 ANKRD45Q5TZF3 282 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 ERC1Q8IUD2 1116 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 SMC5Q8IY18 1101 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 KAZALD1Q96I82 304 aa17.58■□□□□ 0.4
SKA1-202ENST00000398452 TM4SF1P30408 202 aa17.57■□□□□ 0.4
SKA1-202ENST00000398452 APBB1O00213 710 aa17.56■□□□□ 0.4
SKA1-202ENST00000398452 SLC10A5Q5PT55 438 aa17.56■□□□□ 0.4
SKA1-202ENST00000398452 SYNE4Q8N205 404 aa17.56■□□□□ 0.4
SKA1-202ENST00000398452 CCDC85AQ96PX6 553 aaPredicted RBP17.56■□□□□ 0.4
SKA1-202ENST00000398452 EXOC6BQ9Y2D4 811 aa17.56■□□□□ 0.4
SKA1-202ENST00000398452 CSF1RP07333 972 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 MMP10P09238 476 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 TTLL11Q8NHH1 800 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 LRRCC1Q9C099 1032 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 BCL11AQ9H165 835 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 CD2APQ9Y5K6 639 aa17.55■□□□□ 0.4
SKA1-202ENST00000398452 POLRMTO00411 1230 aaKnown RBP17.54■□□□□ 0.4
SKA1-202ENST00000398452 GRIN3BO60391 1043 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 FAM161AQ3B820 660 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 PRR5LQ6MZQ0 368 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 KIF1BPQ96EK5 621 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 CDC5LQ99459 802 aaKnown RBP17.54■□□□□ 0.4
SKA1-202ENST00000398452 COPRSQ9NQ92 184 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 PDZRN3Q9UPQ7 1066 aa17.54■□□□□ 0.4
SKA1-202ENST00000398452 ITGA6P23229 1130 aa17.53■□□□□ 0.4
SKA1-202ENST00000398452 IGHMBP2P38935 993 aaKnown RBP17.53■□□□□ 0.4
SKA1-202ENST00000398452 CHD1LQ86WJ1 897 aa17.53■□□□□ 0.4
SKA1-202ENST00000398452 SIL1Q9H173 461 aa17.53■□□□□ 0.4
SKA1-202ENST00000398452 FBXO3Q9UK99 471 aa17.53■□□□□ 0.4
SKA1-202ENST00000398452 NOP58Q9Y2X3 529 aaKnown RBP17.53■□□□□ 0.4
SKA1-202ENST00000398452 NUCB1Q02818 461 aa17.52■□□□□ 0.4
SKA1-202ENST00000398452 DDR1Q08345 913 aa17.52■□□□□ 0.4
SKA1-202ENST00000398452 SF3B3Q15393 1217 aaKnown RBP17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 131.4 ms