RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 TRPM4Q8TD43 1214 aa21.24■□□□□ 0.99
CUX2-202ENST00000397643 LRRC37AA6NMS7 1700 aa21.24■□□□□ 0.99
CUX2-202ENST00000397643 CCDC85CA6NKD9 419 aa21.23■□□□□ 0.99
CUX2-202ENST00000397643 BBOX1O75936 387 aa21.23■□□□□ 0.99
CUX2-202ENST00000397643 CIAPIN1Q6FI81 312 aa21.23■□□□□ 0.99
CUX2-202ENST00000397643 DPP8Q6V1X1 898 aaPredicted RBP21.23■□□□□ 0.99
CUX2-202ENST00000397643 TMX4Q9H1E5 349 aaPredicted RBP21.23■□□□□ 0.99
CUX2-202ENST00000397643 TSPYL4Q9UJ04 414 aa21.23■□□□□ 0.99
CUX2-202ENST00000397643 TAF1P21675 1872 aa21.22■□□□□ 0.99
CUX2-202ENST00000397643 SHTN1A0MZ66 631 aa21.22■□□□□ 0.99
CUX2-202ENST00000397643 YDJCA8MPS7 323 aa21.22■□□□□ 0.99
CUX2-202ENST00000397643 HCLS1P14317 486 aaPredicted RBP21.22■□□□□ 0.99
CUX2-202ENST00000397643 BRPF1P55201 1214 aaPredicted RBP21.22■□□□□ 0.99
CUX2-202ENST00000397643 NLRP10Q86W26 655 aa21.22■□□□□ 0.99
CUX2-202ENST00000397643 ZC3H15Q8WU90 426 aaKnown RBP21.22■□□□□ 0.99
CUX2-202ENST00000397643 CA12O43570 354 aa21.21■□□□□ 0.99
CUX2-202ENST00000397643 RAD17O75943 681 aa21.21■□□□□ 0.99
CUX2-202ENST00000397643 EIF2S2P20042 333 aaKnown RBP21.21■□□□□ 0.99
CUX2-202ENST00000397643 MPNDQ8N594 471 aa21.21■□□□□ 0.99
CUX2-202ENST00000397643 CASP8AP2Q9UKL3 1982 aa21.21■□□□□ 0.99
CUX2-202ENST00000397643 MAPK8IP3Q9UPT6 1336 aa21.2■□□□□ 0.98
CUX2-202ENST00000397643 MLLT1Q03111 559 aaPredicted RBP21.19■□□□□ 0.98
CUX2-202ENST00000397643 GRAPQ13588 217 aa21.19■□□□□ 0.98
CUX2-202ENST00000397643 GRAPLQ8TC17 118 aaPredicted RBP21.19■□□□□ 0.98
CUX2-202ENST00000397643 BCL2L13Q9BXK5 485 aa21.19■□□□□ 0.98
CUX2-202ENST00000397643 MCOLN1Q9GZU1 580 aa21.19■□□□□ 0.98
CUX2-202ENST00000397643 DDX60Q8IY21 1712 aaKnown RBP21.18■□□□□ 0.98
CUX2-202ENST00000397643 TNIP1Q15025 636 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 HSP90AB3PQ58FF7 597 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 COPS6Q7L5N1 327 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 XAGE3Q8WTP9 111 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 ZIC5Q96T25 663 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 ZNF408Q9H9D4 720 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 COL4A1P02462 1669 aa21.18■□□□□ 0.98
CUX2-202ENST00000397643 DDX46Q7L014 1031 aaKnown RBP21.17■□□□□ 0.98
CUX2-202ENST00000397643 CDC37L1Q7L3B6 337 aa21.17■□□□□ 0.98
CUX2-202ENST00000397643 BABAM1Q9NWV8 329 aa21.17■□□□□ 0.98
CUX2-202ENST00000397643 CNOT7Q9UIV1 285 aaKnown RBP21.17■□□□□ 0.98
CUX2-202ENST00000397643 SH3TC1Q8TE82 1336 aa21.17■□□□□ 0.98
CUX2-202ENST00000397643 TCIRG1Q13488 830 aa21.16■□□□□ 0.98
CUX2-202ENST00000397643 DLK2Q6UY11 383 aa21.16■□□□□ 0.98
CUX2-202ENST00000397643 MICALL2Q8IY33 904 aa21.16■□□□□ 0.98
CUX2-202ENST00000397643 TRMT112Q9UI30 125 aaKnown RBP21.16■□□□□ 0.98
CUX2-202ENST00000397643 AIMP1Q12904 312 aaKnown RBP21.15■□□□□ 0.98
CUX2-202ENST00000397643 PNNQ9H307 717 aaKnown RBP21.15■□□□□ 0.98
CUX2-202ENST00000397643 ZBTB12Q9Y330 459 aaPredicted RBP21.15■□□□□ 0.98
CUX2-202ENST00000397643 RIPK4P57078 832 aa21.14■□□□□ 0.97
CUX2-202ENST00000397643 TMC4Q7Z404 712 aa21.14■□□□□ 0.97
CUX2-202ENST00000397643 USP48Q86UV5 1035 aa21.14■□□□□ 0.97
CUX2-202ENST00000397643 NECTIN2Q92692 538 aa21.14■□□□□ 0.97
CUX2-202ENST00000397643 EGFRP00533 1210 aa21.13■□□□□ 0.97
CUX2-202ENST00000397643 NOGQ13253 232 aa21.13■□□□□ 0.97
CUX2-202ENST00000397643 KRT24Q2M2I5 525 aa21.13■□□□□ 0.97
CUX2-202ENST00000397643 H7C1D1 291 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 PSMD14O00487 310 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 HUNKP57058 714 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 SAMD7Q7Z3H4 446 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 DPF2Q92785 391 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 ZNF428Q96B54 188 aa21.12■□□□□ 0.97
CUX2-202ENST00000397643 FAM155AB1AL88 458 aaPredicted RBP21.11■□□□□ 0.97
CUX2-202ENST00000397643 TMPOP42166 694 aaKnown RBP21.11■□□□□ 0.97
CUX2-202ENST00000397643 CELF1Q92879 486 aaKnown RBP21.11■□□□□ 0.97
CUX2-202ENST00000397643 RTL9Q8NET4 1388 aa21.1■□□□□ 0.97
CUX2-202ENST00000397643 POLR2AP24928 1970 aaKnown RBP21.1■□□□□ 0.97
CUX2-202ENST00000397643 TNRC18O15417 2968 aaPredicted RBP21.1■□□□□ 0.97
CUX2-202ENST00000397643 DGKZQ13574 1117 aa21.1■□□□□ 0.97
CUX2-202ENST00000397643 TBC1D10BQ4KMP7 808 aaPredicted RBP21.1■□□□□ 0.97
CUX2-202ENST00000397643 DBNDD1Q9H9R9 158 aa21.1■□□□□ 0.97
CUX2-202ENST00000397643 CHPF2Q9P2E5 772 aa21.1■□□□□ 0.97
CUX2-202ENST00000397643 SF3B3Q15393 1217 aaKnown RBP21.09■□□□□ 0.97
CUX2-202ENST00000397643 WASHC4Q2M389 1173 aa21.09■□□□□ 0.97
CUX2-202ENST00000397643 KRT26Q7Z3Y9 468 aa21.09■□□□□ 0.97
CUX2-202ENST00000397643 ISCA1Q9BUE6 129 aa21.09■□□□□ 0.97
CUX2-202ENST00000397643 POLLQ9UGP5 575 aa21.09■□□□□ 0.97
CUX2-202ENST00000397643 SCN9AQ15858 1988 aa21.08■□□□□ 0.97
CUX2-202ENST00000397643 ADM5C9JUS6 153 aa21.08■□□□□ 0.97
CUX2-202ENST00000397643 GPSM2P81274 684 aa21.08■□□□□ 0.97
CUX2-202ENST00000397643 RGMBQ6NW40 437 aa21.08■□□□□ 0.97
CUX2-202ENST00000397643 KCNQ5Q9NR82 932 aa21.08■□□□□ 0.97
CUX2-202ENST00000397643 NSFL1CQ9UNZ2 370 aaKnown RBP21.08■□□□□ 0.97
CUX2-202ENST00000397643 PDE4DIPQ5VU43 2346 aa21.07■□□□□ 0.96
CUX2-202ENST00000397643 CHL1O00533 1208 aa21.07■□□□□ 0.96
CUX2-202ENST00000397643 LMOD3Q0VAK6 560 aa21.07■□□□□ 0.96
CUX2-202ENST00000397643 PLBD2Q8NHP8 589 aa21.07■□□□□ 0.96
CUX2-202ENST00000397643 FAM89AQ96GI7 184 aa21.07■□□□□ 0.96
CUX2-202ENST00000397643 GBA2Q9HCG7 927 aaPredicted RBP21.07■□□□□ 0.96
CUX2-202ENST00000397643 RIMBP2O15034 1052 aa21.06■□□□□ 0.96
CUX2-202ENST00000397643 ECE2O60344 883 aa21.06■□□□□ 0.96
CUX2-202ENST00000397643 RPS12P25398 132 aaKnown RBP21.06■□□□□ 0.96
CUX2-202ENST00000397643 CFAP44Q96MT7 982 aa21.06■□□□□ 0.96
CUX2-202ENST00000397643 SAGE1Q9NXZ1 904 aa21.05■□□□□ 0.96
CUX2-202ENST00000397643 ATP5J2-PTCD1G3V325 749 aa21.04■□□□□ 0.96
CUX2-202ENST00000397643 C6orf229H3BNL8 230 aa21.04■□□□□ 0.96
CUX2-202ENST00000397643 DOK7Q18PE1 504 aa21.04■□□□□ 0.96
CUX2-202ENST00000397643 TBC1D16Q8TBP0 767 aa21.04■□□□□ 0.96
CUX2-202ENST00000397643 KIF23Q02241 960 aaPredicted RBP21.03■□□□□ 0.96
CUX2-202ENST00000397643 HDGFL1Q5TGJ6 251 aa21.03■□□□□ 0.96
CUX2-202ENST00000397643 ANKRD13DQ6ZTN6 518 aa21.03■□□□□ 0.96
CUX2-202ENST00000397643 TRIM35Q9UPQ4 493 aa21.03■□□□□ 0.96
CUX2-202ENST00000397643 ASTN2O75129 1339 aaPredicted RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms