RNA–Protein interactions for RNA: ENST00000397442.5

CPNE1-203, Transcript of copine 1, humanhuman

TSL 5 BASIC

Gene CPNE1, Length 1,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-203ENST00000397442 NBPF5PQ86XG9 351 aaPredicted RBP34.03■■■■□ 3.04
CPNE1-203ENST00000397442 C16orf71Q8IYS4 520 aaPredicted RBP34.03■■■■□ 3.04
CPNE1-203ENST00000397442 SLC10A5Q5PT55 438 aa34.02■■■■□ 3.04
CPNE1-203ENST00000397442 KIF1BPQ96EK5 621 aa34.02■■■■□ 3.04
CPNE1-203ENST00000397442 CCDC85AQ96PX6 553 aaPredicted RBP34.02■■■■□ 3.04
CPNE1-203ENST00000397442 SIL1Q9H173 461 aa34.02■■■■□ 3.04
CPNE1-203ENST00000397442 ZBTB47Q9UFB7 747 aaPredicted RBP34.02■■■■□ 3.04
CPNE1-203ENST00000397442 ABCC12Q96J65 1359 aa34.01■■■■□ 3.04
CPNE1-203ENST00000397442 GREM2Q9H772 168 aa34.01■■■■□ 3.04
CPNE1-203ENST00000397442 HSP90B1P14625 803 aaKnown RBP34■■■■□ 3.03
CPNE1-203ENST00000397442 STK32BQ9NY57 414 aa34■■■■□ 3.03
CPNE1-203ENST00000397442 SASH1O94885 1247 aa33.99■■■■□ 3.03
CPNE1-203ENST00000397442 G3BP1Q13283 466 aaKnown RBP eCLIP33.99■■■■□ 3.032e-8■□□□□ 11.1
CPNE1-203ENST00000397442 OS9Q13438 667 aaPredicted RBP33.99■■■■□ 3.03
CPNE1-203ENST00000397442 CCDC57Q2TAC2 916 aa33.99■■■■□ 3.03
CPNE1-203ENST00000397442 TPTE2Q6XPS3 522 aa33.99■■■■□ 3.03
CPNE1-203ENST00000397442 CASZ1Q86V15 1759 aa33.99■■■■□ 3.03
CPNE1-203ENST00000397442 ERC1Q8IUD2 1116 aa33.99■■■■□ 3.03
CPNE1-203ENST00000397442 OTUD7AQ8TE49 926 aaPredicted RBP33.99■■■■□ 3.03
CPNE1-203ENST00000397442 ZNF594Q96JF6 807 aaPredicted RBP33.99■■■■□ 3.03
CPNE1-203ENST00000397442 IL1RAPL2Q9NP60 686 aa33.98■■■■□ 3.03
CPNE1-203ENST00000397442 IFIT5Q13325 482 aaKnown RBP33.97■■■■□ 3.03
CPNE1-203ENST00000397442 MSH5O43196 834 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 ITGA6P23229 1130 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 PLEKHM2Q8IWE5 1019 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 BCL11AQ9H165 835 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP33.96■■■■□ 3.03
CPNE1-203ENST00000397442 GTF2E1P29083 439 aaPredicted RBP33.96■■■■□ 3.03
CPNE1-203ENST00000397442 C3orf67Q6ZVT6 689 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 ATG9AQ7Z3C6 839 aa33.96■■■■□ 3.03
CPNE1-203ENST00000397442 SALL3Q9BXA9 1300 aa33.95■■■■□ 3.03
CPNE1-203ENST00000397442 DDR1Q08345 913 aa33.95■■■■□ 3.03
CPNE1-203ENST00000397442 RTL9Q8NET4 1388 aa33.94■■■■□ 3.02
CPNE1-203ENST00000397442 NLGN1Q8N2Q7 840 aa33.94■■■■□ 3.02
CPNE1-203ENST00000397442 ANKRD18BA2A2Z9 1011 aa33.93■■■■□ 3.02
CPNE1-203ENST00000397442 POLRMTO00411 1230 aaKnown RBP33.93■■■■□ 3.02
CPNE1-203ENST00000397442 SF3B3Q15393 1217 aaKnown RBP33.93■■■■□ 3.02
CPNE1-203ENST00000397442 EYA2O00167 538 aa33.92■■■■□ 3.02
CPNE1-203ENST00000397442 CIAO1O76071 339 aa33.92■■■■□ 3.02
CPNE1-203ENST00000397442 CCDC152Q4G0S7 254 aa33.92■■■■□ 3.02
CPNE1-203ENST00000397442 CCDC24Q8N4L8 307 aa33.92■■■■□ 3.02
CPNE1-203ENST00000397442 PUS3Q9BZE2 481 aaKnown RBP33.92■■■■□ 3.02
CPNE1-203ENST00000397442 SERPINB2P05120 415 aa33.91■■■■□ 3.02
CPNE1-203ENST00000397442 LRRC24Q50LG9 513 aa33.91■■■■□ 3.02
CPNE1-203ENST00000397442 PRR5LQ6MZQ0 368 aa33.91■■■■□ 3.02
CPNE1-203ENST00000397442 CNBD1Q8NA66 436 aa33.91■■■■□ 3.02
CPNE1-203ENST00000397442 TNRC6CQ9HCJ0 1690 aaKnown RBP33.91■■■■□ 3.02
CPNE1-203ENST00000397442 LRP5O75197 1615 aa33.91■■■■□ 3.02
CPNE1-203ENST00000397442 FBXO3Q9UK99 471 aa33.9■■■■□ 3.02
CPNE1-203ENST00000397442 SEC31BQ9NQW1 1179 aa33.89■■■■□ 3.02
CPNE1-203ENST00000397442 RIC1Q4ADV7 1423 aa33.88■■■■□ 3.01
CPNE1-203ENST00000397442 NRXN2Q9P2S2 1712 aa33.88■■■■□ 3.01
CPNE1-203ENST00000397442 IL15P40933 162 aaPredicted RBP33.88■■■■□ 3.01
CPNE1-203ENST00000397442 TFCP2Q12800 502 aa33.88■■■■□ 3.01
CPNE1-203ENST00000397442 CLASRPQ8N2M8 674 aaKnown RBP33.88■■■■□ 3.01
CPNE1-203ENST00000397442 UPF1Q92900 1129 aaKnown RBP eCLIP33.88■■■■□ 3.01
CPNE1-203ENST00000397442 TAF7LQ5H9L4 462 aa33.87■■■■□ 3.01
CPNE1-203ENST00000397442 COL4A1P02462 1669 aa33.87■■■■□ 3.01
CPNE1-203ENST00000397442 NLRP3Q96P20 1036 aa33.87■■■■□ 3.01
CPNE1-203ENST00000397442 OSBPL3Q9H4L5 887 aa33.87■■■■□ 3.01
CPNE1-203ENST00000397442 PDE1AP54750 535 aa33.86■■■■□ 3.01
CPNE1-203ENST00000397442 NPHP1O15259 732 aa33.85■■■■□ 3.01
CPNE1-203ENST00000397442 EAF2Q96CJ1 260 aaPredicted RBP33.85■■■■□ 3.01
CPNE1-203ENST00000397442 RIPOR2Q9Y4F9 1068 aa33.85■■■■□ 3.01
CPNE1-203ENST00000397442 MX1P20591 662 aa33.84■■■■□ 3.01
CPNE1-203ENST00000397442 STAP2Q9UGK3 403 aa33.84■■■■□ 3.01
CPNE1-203ENST00000397442 MSL1Q68DK7 614 aa33.84■■■■□ 3.01
CPNE1-203ENST00000397442 LDHAL6AQ6ZMR3 332 aa33.84■■■■□ 3.01
CPNE1-203ENST00000397442 PDGFDQ9GZP0 370 aaPredicted RBP33.84■■■■□ 3.01
CPNE1-203ENST00000397442 TAF1P21675 1872 aa33.82■■■■□ 3
CPNE1-203ENST00000397442 MMP10P09238 476 aa33.82■■■■□ 3
CPNE1-203ENST00000397442 AACSQ86V21 672 aa33.82■■■■□ 3
CPNE1-203ENST00000397442 SPEF2Q9C093 1822 aa33.81■■■■□ 3
CPNE1-203ENST00000397442 ST5P78524 1137 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 TNNI3KQ59H18 835 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 BMP2KLQ5H9B9 411 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 TTC22Q5TAA0 569 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 TSHZ3Q63HK5 1081 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 FPGT-TNNI3KV9GXZ4 949 aa33.8■■■■□ 3
CPNE1-203ENST00000397442 GSPT1P15170 499 aaKnown RBP33.8■■■■□ 3
CPNE1-203ENST00000397442 GPR108Q9NPR9 543 aa33.79■■■■□ 3
CPNE1-203ENST00000397442 CDC5LQ99459 802 aaKnown RBP33.78■■■■□ 3
CPNE1-203ENST00000397442 CNNM1Q9NRU3 951 aa33.78■■■■□ 3
CPNE1-203ENST00000397442 TLR7Q9NYK1 1049 aaKnown RBP33.78■■■■□ 3
CPNE1-203ENST00000397442 IFIT2P09913 472 aaKnown RBP33.77■■■■□ 3
CPNE1-203ENST00000397442 AOX1Q06278 1338 aa33.77■■■■□ 3
CPNE1-203ENST00000397442 CCDC8Q9H0W5 538 aaPredicted RBP33.77■■■■□ 3
CPNE1-203ENST00000397442 CEP126Q9P2H0 1117 aa33.77■■■■□ 3
CPNE1-203ENST00000397442 ANKRD31Q8N7Z5 1873 aa33.77■■■■□ 3
CPNE1-203ENST00000397442 C8orf34Q49A92 452 aa33.77■■■■□ 3
CPNE1-203ENST00000397442 CRY2Q49AN0 593 aa33.76■■■□□ 2.99
CPNE1-203ENST00000397442 VGLL2Q8N8G2 317 aa33.76■■■□□ 2.99
CPNE1-203ENST00000397442 PARP3Q9Y6F1 533 aa33.76■■■□□ 2.99
CPNE1-203ENST00000397442 ZNF609O15014 1411 aa33.75■■■□□ 2.99
CPNE1-203ENST00000397442 IGHMBP2P38935 993 aaKnown RBP33.75■■■□□ 2.99
CPNE1-203ENST00000397442 MPHOSPH8Q99549 860 aa33.75■■■□□ 2.99
CPNE1-203ENST00000397442 PI4K2BQ8TCG2 481 aa33.74■■■□□ 2.99
CPNE1-203ENST00000397442 CELF1Q92879 486 aaKnown RBP33.74■■■□□ 2.99
CPNE1-203ENST00000397442 KLRG2A4D1S0 409 aaPredicted RBP33.74■■■□□ 2.99
CPNE1-203ENST00000397442 METTL24Q5JXM2 366 aa33.74■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms