RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 TJP1Q07157 1748 aa26.01■■□□□ 1.75
TRIM54-202ENST00000380075 RABL6Q3YEC7 729 aaPredicted RBP26.01■■□□□ 1.75
TRIM54-202ENST00000380075 ZNF831Q5JPB2 1677 aa26.01■■□□□ 1.75
TRIM54-202ENST00000380075 STARD3NLO95772 234 aa26■■□□□ 1.75
TRIM54-202ENST00000380075 CRKLP46109 303 aaKnown RBP26■■□□□ 1.75
TRIM54-202ENST00000380075 ZGPATQ8N5A5 531 aaKnown RBP26■■□□□ 1.75
TRIM54-202ENST00000380075 AKT1S1Q96B36 256 aa26■■□□□ 1.75
TRIM54-202ENST00000380075 NUP188Q5SRE5 1749 aa26■■□□□ 1.75
TRIM54-202ENST00000380075 GZF1Q9H116 711 aaPredicted RBP26■■□□□ 1.75
TRIM54-202ENST00000380075 INTS5Q6P9B9 1019 aaKnown RBP25.99■■□□□ 1.75
TRIM54-202ENST00000380075 CWC27Q6UX04 472 aaKnown RBP25.99■■□□□ 1.75
TRIM54-202ENST00000380075 EAF2Q96CJ1 260 aaPredicted RBP25.99■■□□□ 1.75
TRIM54-202ENST00000380075 AFDNP55196 1824 aaKnown RBP25.98■■□□□ 1.75
TRIM54-202ENST00000380075 A1BGP04217 495 aa25.98■■□□□ 1.75
TRIM54-202ENST00000380075 BRPF3Q9ULD4 1205 aa25.98■■□□□ 1.75
TRIM54-202ENST00000380075 SLC15A2Q16348 729 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 NBPF14Q5TI25 921 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 SMIM5Q71RC9 77 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 AK7Q96M32 723 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 TAF1LQ8IZX4 1826 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 CNTNAP4Q9C0A0 1308 aa25.97■■□□□ 1.75
TRIM54-202ENST00000380075 HMGB2P26583 209 aaKnown RBP25.96■■□□□ 1.75
TRIM54-202ENST00000380075 PIP4K2AP48426 406 aaPredicted RBP25.96■■□□□ 1.75
TRIM54-202ENST00000380075 EPHA10Q5JZY3 1008 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 RC3H1Q5TC82 1133 aaKnown RBP25.96■■□□□ 1.75
TRIM54-202ENST00000380075 AMIGO3Q86WK7 504 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 CCDC87Q9NVE4 849 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 STK32BQ9NY57 414 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 SNX14Q9Y5W7 946 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 CICQ96RK0 1608 aaPredicted RBP25.96■■□□□ 1.75
TRIM54-202ENST00000380075 C4BP0C0L5 1744 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 KLHL40Q2TBA0 621 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 TFCP2L1Q9NZI6 479 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 ZBTB1Q9Y2K1 713 aa25.96■■□□□ 1.75
TRIM54-202ENST00000380075 GNPATO15228 680 aa25.95■■□□□ 1.75
TRIM54-202ENST00000380075 RFX5P48382 616 aaPredicted RBP25.95■■□□□ 1.75
TRIM54-202ENST00000380075 COL5A3P25940 1745 aaPredicted RBP25.95■■□□□ 1.74
TRIM54-202ENST00000380075 A0A087WZG4 1122 aa25.95■■□□□ 1.74
TRIM54-202ENST00000380075 MRE11P49959 708 aa25.95■■□□□ 1.74
TRIM54-202ENST00000380075 CASP7P55210 303 aa25.95■■□□□ 1.74
TRIM54-202ENST00000380075 UBE3BQ7Z3V4 1068 aa25.95■■□□□ 1.74
TRIM54-202ENST00000380075 SNRKQ9NRH2 765 aa25.95■■□□□ 1.74
TRIM54-202ENST00000380075 UPF3BQ9BZI7 483 aaKnown RBP25.94■■□□□ 1.74
TRIM54-202ENST00000380075 SIL1Q9H173 461 aa25.94■■□□□ 1.74
TRIM54-202ENST00000380075 NBPF26B4DH59 902 aa25.93■■□□□ 1.74
TRIM54-202ENST00000380075 NBPF10Q6P3W6 841 aaKnown RBP25.93■■□□□ 1.74
TRIM54-202ENST00000380075 NBPF15Q8N660 670 aa25.93■■□□□ 1.74
TRIM54-202ENST00000380075 KCNB2Q92953 911 aa25.93■■□□□ 1.74
TRIM54-202ENST00000380075 CCDC8Q9H0W5 538 aaPredicted RBP25.93■■□□□ 1.74
TRIM54-202ENST00000380075 PTPN12Q05209 780 aaKnown RBP25.93■■□□□ 1.74
TRIM54-202ENST00000380075 PKP1Q13835 747 aa25.92■■□□□ 1.74
TRIM54-202ENST00000380075 MYH14Q7Z406 1995 aaKnown RBP25.91■■□□□ 1.74
TRIM54-202ENST00000380075 H7C1W4 665 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 RPS6KA4O75676 772 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 PHF14O94880 888 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 TM6SF1Q9BZW5 370 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 ZDHHC9Q9Y397 364 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 R3HDM1Q15032 1099 aaKnown RBP25.91■■□□□ 1.74
TRIM54-202ENST00000380075 MCTP1Q6DN14 999 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 TTC14Q96N46 770 aa25.91■■□□□ 1.74
TRIM54-202ENST00000380075 RTCBQ9Y3I0 505 aaKnown RBP25.91■■□□□ 1.74
TRIM54-202ENST00000380075 ATP5J2-PTCD1G3V325 749 aa25.9■■□□□ 1.74
TRIM54-202ENST00000380075 CWC25Q9NXE8 425 aaPredicted RBP25.9■■□□□ 1.74
TRIM54-202ENST00000380075 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.9■■□□□ 1.74
TRIM54-202ENST00000380075 DDX49Q9Y6V7 483 aaKnown RBP25.9■■□□□ 1.74
TRIM54-202ENST00000380075 RFX7Q2KHR2 1363 aa25.9■■□□□ 1.74
TRIM54-202ENST00000380075 BRD1O95696 1058 aa25.89■■□□□ 1.74
TRIM54-202ENST00000380075 KLHDC4Q8TBB5 520 aa25.89■■□□□ 1.74
TRIM54-202ENST00000380075 CCDC171Q6TFL3 1326 aa25.89■■□□□ 1.74
TRIM54-202ENST00000380075 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.89■■□□□ 1.73
TRIM54-202ENST00000380075 XRCC6P12956 609 aaKnown RBP eCLIP25.89■■□□□ 1.73
TRIM54-202ENST00000380075 ATP5JP18859 108 aa25.89■■□□□ 1.73
TRIM54-202ENST00000380075 TLR7Q9NYK1 1049 aaKnown RBP25.89■■□□□ 1.73
TRIM54-202ENST00000380075 ZNF330Q9Y3S2 320 aaPredicted RBP25.89■■□□□ 1.73
TRIM54-202ENST00000380075 PSDA5PKW4 1024 aaPredicted RBP25.88■■□□□ 1.73
TRIM54-202ENST00000380075 TNNI3KQ59H18 835 aa25.88■■□□□ 1.73
TRIM54-202ENST00000380075 RASEFQ8IZ41 740 aa25.88■■□□□ 1.73
TRIM54-202ENST00000380075 CCDC191Q8NCU4 936 aa25.88■■□□□ 1.73
TRIM54-202ENST00000380075 FPGT-TNNI3KV9GXZ4 949 aa25.88■■□□□ 1.73
TRIM54-202ENST00000380075 PNPLA7Q6ZV29 1317 aa25.88■■□□□ 1.73
TRIM54-202ENST00000380075 PDGFDQ9GZP0 370 aaPredicted RBP25.87■■□□□ 1.73
TRIM54-202ENST00000380075 LMBRD1Q9NUN5 540 aa25.87■■□□□ 1.73
TRIM54-202ENST00000380075 EIF5P55010 431 aaKnown RBP25.87■■□□□ 1.73
TRIM54-202ENST00000380075 FSD1Q9BTV5 496 aa25.87■■□□□ 1.73
TRIM54-202ENST00000380075 ZKSCAN1P17029 563 aaPredicted RBP25.86■■□□□ 1.73
TRIM54-202ENST00000380075 IL6STP40189 918 aaPredicted RBP25.86■■□□□ 1.73
TRIM54-202ENST00000380075 BOLA2Q9H3K6 86 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 LIMCH1Q9UPQ0 1083 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 PTH1RQ03431 593 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 NECTIN1Q15223 517 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 TRAPPC3LQ5T215 181 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 TTLL7Q6ZT98 887 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 COL23A1Q86Y22 540 aaPredicted RBP25.86■■□□□ 1.73
TRIM54-202ENST00000380075 ARHGEF1Q92888 912 aaKnown RBP25.86■■□□□ 1.73
TRIM54-202ENST00000380075 GRPEL1Q9HAV7 217 aa25.86■■□□□ 1.73
TRIM54-202ENST00000380075 FOXO4P98177 505 aa25.85■■□□□ 1.73
TRIM54-202ENST00000380075 NMIQ13287 307 aaPredicted RBP25.85■■□□□ 1.73
TRIM54-202ENST00000380075 MAP4K1Q92918 833 aa25.85■■□□□ 1.73
TRIM54-202ENST00000380075 TFCP2Q12800 502 aa25.84■■□□□ 1.73
TRIM54-202ENST00000380075 VPS53Q5VIR6 699 aa25.84■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms