RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 USP16Q9Y5T5 823 aa17.29■□□□□ 0.36
MSH5-201ENST00000375703 TFCP2Q12800 502 aa17.28■□□□□ 0.36
MSH5-201ENST00000375703 PIBF1Q8WXW3 757 aa17.28■□□□□ 0.36
MSH5-201ENST00000375703 PTPN12Q05209 780 aaKnown RBP17.28■□□□□ 0.36
MSH5-201ENST00000375703 NOLC1Q14978 699 aaKnown RBP eCLIP17.28■□□□□ 0.36
MSH5-201ENST00000375703 TNNI3KQ59H18 835 aa17.28■□□□□ 0.36
MSH5-201ENST00000375703 DBNLQ9UJU6 430 aaKnown RBP17.28■□□□□ 0.36
MSH5-201ENST00000375703 FPGT-TNNI3KV9GXZ4 949 aa17.28■□□□□ 0.36
MSH5-201ENST00000375703 ELP1O95163 1332 aa17.28■□□□□ 0.36
MSH5-201ENST00000375703 SIPA1L3O60292 1781 aaPredicted RBP17.28■□□□□ 0.36
MSH5-201ENST00000375703 SNRPA1P09661 255 aaKnown RBP17.27■□□□□ 0.36
MSH5-201ENST00000375703 RFX5P48382 616 aaPredicted RBP17.27■□□□□ 0.36
MSH5-201ENST00000375703 PIP4K2AP48426 406 aaPredicted RBP17.27■□□□□ 0.36
MSH5-201ENST00000375703 KRT32Q14532 448 aa17.27■□□□□ 0.36
MSH5-201ENST00000375703 USPL1Q5W0Q7 1092 aa17.27■□□□□ 0.36
MSH5-201ENST00000375703 IFNL2Q8IZJ0 200 aa17.27■□□□□ 0.36
MSH5-201ENST00000375703 TTC5Q8N0Z6 440 aa17.27■□□□□ 0.36
MSH5-201ENST00000375703 SCAND2PQ9GZW5 306 aaPredicted RBP17.27■□□□□ 0.36
MSH5-201ENST00000375703 TFIP11Q9UBB9 837 aaKnown RBP17.27■□□□□ 0.36
MSH5-201ENST00000375703 GOLGA6L4A6NEF3 574 aa17.27■□□□□ 0.35
MSH5-201ENST00000375703 DYNC1I1O14576 645 aa17.27■□□□□ 0.35
MSH5-201ENST00000375703 PROSER2Q86WR7 435 aaPredicted RBP17.27■□□□□ 0.35
MSH5-201ENST00000375703 KDM6AO15550 1401 aaPredicted RBP17.26■□□□□ 0.35
MSH5-201ENST00000375703 LIG1P18858 919 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 CAMK4Q16566 473 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 UBE3BQ7Z3V4 1068 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 NEK1Q96PY6 1258 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 NUP62CLQ9H1M0 184 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 JCADQ9P266 1359 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 AP5Z1O43299 807 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 MAP3K11Q16584 847 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 SPATA32Q96LK8 384 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 DNAJC2Q99543 621 aaKnown RBP17.26■□□□□ 0.35
MSH5-201ENST00000375703 NDUFB9Q9Y6M9 179 aa17.26■□□□□ 0.35
MSH5-201ENST00000375703 LMTK3Q96Q04 1460 aa17.25■□□□□ 0.35
MSH5-201ENST00000375703 LRP10Q7Z4F1 713 aa17.25■□□□□ 0.35
MSH5-201ENST00000375703 CAMTA1Q9Y6Y1 1673 aa17.25■□□□□ 0.35
MSH5-201ENST00000375703 ATP5J2-PTCD1G3V325 749 aa17.25■□□□□ 0.35
MSH5-201ENST00000375703 PTCD1O75127 700 aaKnown RBP17.25■□□□□ 0.35
MSH5-201ENST00000375703 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.25■□□□□ 0.353e-7■■□□□ 13.8
MSH5-201ENST00000375703 ADAMTS7Q9UKP4 1686 aa17.25■□□□□ 0.35
MSH5-201ENST00000375703 A0A087WZG4 1122 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 RABL6Q3YEC7 729 aaPredicted RBP17.24■□□□□ 0.35
MSH5-201ENST00000375703 MRC1P22897 1456 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 CSB-PGBD3P0DP91 1061 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
MSH5-201ENST00000375703 CCDC129Q6ZRS4 1044 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 FMNL2Q96PY5 1086 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 SEC62Q99442 399 aaKnown RBP17.24■□□□□ 0.35
MSH5-201ENST00000375703 DBNDD2Q9BQY9 259 aa17.24■□□□□ 0.35
MSH5-201ENST00000375703 U3KPZ7 1027 aaPredicted RBP17.24■□□□□ 0.35
MSH5-201ENST00000375703 COL15A1P39059 1388 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 MCMDC2Q4G0Z9 681 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 Q6ZUG5 572 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 MAP7D2Q96T17 732 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 TNMDQ9H2S6 317 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 DACT1Q9NYF0 836 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 LEO1Q8WVC0 666 aaPredicted RBP17.23■□□□□ 0.35
MSH5-201ENST00000375703 GTF3C6Q969F1 213 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 DCAF5Q96JK2 942 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 HAUS7Q99871 368 aa17.23■□□□□ 0.35
MSH5-201ENST00000375703 CHGBP05060 677 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 HSP90B1P14625 803 aaKnown RBP17.22■□□□□ 0.35
MSH5-201ENST00000375703 TYRO3Q06418 890 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 C17orf53Q8N3J3 647 aaPredicted RBP17.22■□□□□ 0.35
MSH5-201ENST00000375703 FAM200AQ8TCP9 573 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 JAK2O60674 1132 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 TPM3P06753 285 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 MRVI1Q9Y6F6 885 aa17.22■□□□□ 0.35
MSH5-201ENST00000375703 CYP21A2P08686 494 aa17.21■□□□□ 0.35
MSH5-201ENST00000375703 CKAP2LQ8IYA6 745 aa17.21■□□□□ 0.35
MSH5-201ENST00000375703 SPC24Q8NBT2 197 aa17.21■□□□□ 0.35
MSH5-201ENST00000375703 C19orf44Q9H6X5 657 aa17.21■□□□□ 0.35
MSH5-201ENST00000375703 RGPD5Q99666 1765 aa17.21■□□□□ 0.35
MSH5-201ENST00000375703 DDX46Q7L014 1031 aaKnown RBP17.21■□□□□ 0.35
MSH5-201ENST00000375703 DDX19AQ9NUU7 478 aaKnown RBP17.21■□□□□ 0.35
MSH5-201ENST00000375703 C5P01031 1676 aa17.21■□□□□ 0.34
MSH5-201ENST00000375703 C1orf167Q5SNV9 1468 aa17.21■□□□□ 0.34
MSH5-201ENST00000375703 GOLGA6L6A8MZA4 724 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 LMBR1LQ6UX01 489 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 MYRIPQ8NFW9 859 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 SPTLC3Q9NUV7 552 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 CCDC9Q9Y3X0 531 aaKnown RBP17.2■□□□□ 0.34
MSH5-201ENST00000375703 ZNF609O15014 1411 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 TRPM3Q9HCF6 1732 aaPredicted RBP17.2■□□□□ 0.34
MSH5-201ENST00000375703 H3BQV1 296 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 CYP27B1O15528 508 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 CABP4P57796 275 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 FGD1P98174 961 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 IFFO2Q5TF58 517 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 PLBD2Q8NHP8 589 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 BRF1Q92994 677 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 PRIMPOLQ96LW4 560 aa17.2■□□□□ 0.34
MSH5-201ENST00000375703 RFX7Q2KHR2 1363 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 CASP7P55210 303 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 LUZP1Q86V48 1076 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 KBTBD3Q8NAB2 608 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 DDX11Q96FC9 970 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 NEUROD6Q96NK8 337 aa17.19■□□□□ 0.34
MSH5-201ENST00000375703 HMGN5P82970 282 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms