RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 USP47Q96K76 1375 aa9.38□□□□□ -0.91
USP48-203ENST00000374732 KIAA1958Q8N8K9 716 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 GIPC2Q8TF65 315 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 QTRT2Q9H974 415 aaKnown RBP9.37□□□□□ -0.91
USP48-203ENST00000374732 SLC27A2O14975 620 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 COL19A1Q14993 1142 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 CATIPQ7Z7H3 387 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 LMNTD2Q8IXW0 634 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 RPUSD2Q8IZ73 545 aaKnown RBP9.37□□□□□ -0.91
USP48-203ENST00000374732 SAMD3Q8N6K7 520 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 LSM14AQ8ND56 463 aaKnown RBP9.37□□□□□ -0.91
USP48-203ENST00000374732 AS3MTQ9HBK9 375 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 NOL7Q9UMY1 257 aaKnown RBP9.37□□□□□ -0.91
USP48-203ENST00000374732 DIP2AQ14689 1571 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 SEPT2Q15019 361 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 PLPP6Q8IY26 295 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 IQCGQ9H095 443 aaKnown RBP9.37□□□□□ -0.91
USP48-203ENST00000374732 CALCOCO1Q9P1Z2 691 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 BLOC1S6Q9UL45 172 aa9.37□□□□□ -0.91
USP48-203ENST00000374732 CCDC93Q567U6 631 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 CCDC73Q6ZRK6 1079 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 RELL1Q8IUW5 271 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 ATRIPQ8WXE1 791 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 FEZ1Q99689 392 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 SLC7A5P2Q9GIP4 190 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 PRKRIP1Q9H875 184 aaPredicted RBP9.36□□□□□ -0.91
USP48-203ENST00000374732 ETAA1Q9NY74 926 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 UGGT1Q9NYU2 1555 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 CCDC196A0A1B0GTZ2 297 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 THOC1Q96FV9 657 aaKnown RBP9.36□□□□□ -0.91
USP48-203ENST00000374732 TRERF1Q96PN7 1200 aa9.36□□□□□ -0.91
USP48-203ENST00000374732 PDGFDQ9GZP0 370 aaPredicted RBP9.36□□□□□ -0.91
USP48-203ENST00000374732 PRSS47A8MTI9 375 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 LDHAP00338 332 aaKnown RBP9.35□□□□□ -0.91
USP48-203ENST00000374732 ENPP1P22413 925 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 CHAF1AQ13111 956 aaPredicted RBP9.35□□□□□ -0.91
USP48-203ENST00000374732 AKNAD1Q5T1N1 836 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 SDE2Q6IQ49 451 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 TSR2Q969E8 191 aaKnown RBP9.35□□□□□ -0.91
USP48-203ENST00000374732 CCDC144AA2RUR9 1427 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 TRPM1Q7Z4N2 1603 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 MED1Q15648 1581 aaPredicted RBP9.35□□□□□ -0.91
USP48-203ENST00000374732 TAGLNQ01995 201 aaKnown RBP9.35□□□□□ -0.91
USP48-203ENST00000374732 KLHL10Q6JEL2 608 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 STK11IPQ8N1F8 1099 aa9.35□□□□□ -0.91
USP48-203ENST00000374732 DYNC1I1O14576 645 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 MYBL2P10244 700 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 AGAP9Q5VTM2 703 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 CCDC174Q6PII3 467 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 SYNE3Q6ZMZ3 975 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 LCA5Q86VQ0 697 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 JDP2Q8WYK2 163 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 CENPTQ96BT3 561 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 CHST12Q9NRB3 414 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 ZMYM3Q14202 1370 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 CCDC144BQ3MJ40 725 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 NDUFAF2Q8N183 169 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 NACA2Q9H009 215 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 CPSF2Q9P2I0 782 aaKnown RBP9.34□□□□□ -0.91
USP48-203ENST00000374732 AKAP2Q9Y2D5 859 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 PRAG1Q86YV5 1406 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 GPRASP1Q5JY77 1395 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 PRIM1P49642 420 aaKnown RBP9.34□□□□□ -0.91
USP48-203ENST00000374732 ZNF131P52739 623 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 PDE4DQ08499 809 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 GJC2Q5T442 439 aaPredicted RBP9.34□□□□□ -0.91
USP48-203ENST00000374732 PCGF5Q86SE9 256 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 AK7Q96M32 723 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 TBC1D7Q9P0N9 293 aa9.34□□□□□ -0.91
USP48-203ENST00000374732 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 TLDC2A0PJX2 215 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 MMEP08473 750 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 TRDNQ13061 729 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 PRPF4BQ13523 1007 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 TRIM29Q14134 588 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 SIM2Q14190 667 aaPredicted RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 FAM117BQ6P1L5 589 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 RAVER1Q8IY67 606 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 PAF1Q8N7H5 531 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 TRIM6Q9C030 488 aaPredicted RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 CHMP5Q9NZZ3 219 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 DMGDHQ9UI17 866 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 NKTRP30414 1462 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 UBR1Q8IWV7 1749 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 KTN1Q86UP2 1357 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 MROH1Q8NDA8 1641 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 UQCRHLA0A096LP55 91 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 UQCRHP07919 91 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 RBP3P10745 1247 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.33□□□□□ -0.92
USP48-203ENST00000374732 CCDC91Q7Z6B0 441 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 TBC1D22AQ8WUA7 517 aa9.33□□□□□ -0.92
USP48-203ENST00000374732 NAP1L4Q99733 375 aaKnown RBP9.33□□□□□ -0.92
USP48-203ENST00000374732 MYO1BO43795 1136 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 VCAM1P19320 739 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 DDB1Q16531 1140 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.32□□□□□ -0.92
USP48-203ENST00000374732 ERP27Q96DN0 273 aa9.32□□□□□ -0.92
USP48-203ENST00000374732 TBC1D2Q9BYX2 928 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms