RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 CEP112Q8N8E3 955 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 SLC26A6Q9BXS9 759 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 PZPP20742 1482 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 MATR3P43243 847 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 HLTFQ14527 1009 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 RUFY3Q7L099 469 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 OTUD7AQ8TE49 926 aaPredicted RBP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 RAPGEF6Q8TEU7 1601 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 ERO1AQ96HE7 468 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 IFNKQ9P0W0 207 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 FGFR1OPO95684 399 aaKnown RBP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 ARHGAP30Q7Z6I6 1101 aaPredicted RBP18.29■□□□□ 0.52
COL17A1-202ENST00000369733 CREB3L3Q68CJ9 461 aa18.29■□□□□ 0.52
COL17A1-202ENST00000369733 IGHMBP2P38935 993 aaKnown RBP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 IFIT5Q13325 482 aaKnown RBP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 GTF3C6Q969F1 213 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 TTC41PQ6P2S7 1318 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 CKAP4Q07065 602 aaKnown RBP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 SNRKQ9NRH2 765 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 NLRP5P59047 1200 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 CCDC175P0C221 793 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 MARCKSP29966 332 aaPredicted RBP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 RNF41Q9H4P4 317 aaPredicted RBP18.28■□□□□ 0.52
COL17A1-202ENST00000369733 GOPCQ9HD26 462 aa18.28■□□□□ 0.52
COL17A1-202ENST00000369733 MAATS1Q7Z4T9 603 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 CTAGE1Q96RT6 745 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 PPP1R9BQ96SB3 815 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 RANBP6O60518 1105 aaKnown RBP18.27■□□□□ 0.52
COL17A1-202ENST00000369733 ZC3H6P61129 1189 aaKnown RBP18.27■□□□□ 0.52
COL17A1-202ENST00000369733 ANKRD18AQ8IVF6 992 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 CHPF2Q9P2E5 772 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 HSF2BPO75031 334 aa18.27■□□□□ 0.52
COL17A1-202ENST00000369733 MCMDC2Q4G0Z9 681 aa18.27■□□□□ 0.51
COL17A1-202ENST00000369733 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP18.27■□□□□ 0.51
COL17A1-202ENST00000369733 VPS18Q9P253 973 aa18.27■□□□□ 0.51
COL17A1-202ENST00000369733 POLKQ9UBT6 870 aa18.27■□□□□ 0.51
COL17A1-202ENST00000369733 SPTLC2O15270 562 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 IQCA1Q86XH1 822 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 ALG1Q9BT22 464 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 DUOX2Q9NRD8 1548 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 MSH6P52701 1360 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 CTAGE9A4FU28 777 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 KRT24Q2M2I5 525 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 VPS36Q86VN1 386 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 TMEM63CQ9P1W3 806 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 LAMC3Q9Y6N6 1575 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 GADD45BO75293 160 aaPredicted RBP18.26■□□□□ 0.51
COL17A1-202ENST00000369733 GBP2P32456 591 aaPredicted RBP18.26■□□□□ 0.51
COL17A1-202ENST00000369733 UBE3BQ7Z3V4 1068 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 TICAM2Q86XR7 235 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 USP5P45974 858 aa18.26■□□□□ 0.51
COL17A1-202ENST00000369733 CPA1P15085 419 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 SPECC1Q5M775 1068 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 PHACTR3Q96KR7 559 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 NPC1L1Q9UHC9 1359 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 CCDC194A0A1B0GVG4 234 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 ZNF500O60304 480 aaPredicted RBP18.25■□□□□ 0.51
COL17A1-202ENST00000369733 PYM1Q9BRP8 204 aaKnown RBP18.25■□□□□ 0.51
COL17A1-202ENST00000369733 PTCD1O75127 700 aaKnown RBP18.25■□□□□ 0.51
COL17A1-202ENST00000369733 CATIPQ7Z7H3 387 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 CTTNBP2Q8WZ74 1663 aa18.25■□□□□ 0.51
COL17A1-202ENST00000369733 NUP153P49790 1475 aaKnown RBP18.24■□□□□ 0.51
COL17A1-202ENST00000369733 URB2Q14146 1524 aaKnown RBP18.24■□□□□ 0.51
COL17A1-202ENST00000369733 AFMP43652 599 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 FAM114A1Q8IWE2 563 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 SEC63Q9UGP8 760 aaKnown RBP18.24■□□□□ 0.51
COL17A1-202ENST00000369733 ATP5J2-PTCD1G3V325 749 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 KARSQ15046 597 aaKnown RBP18.24■□□□□ 0.51
COL17A1-202ENST00000369733 PIP4K2BP78356 416 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 RRAGBQ5VZM2 374 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 KDM5BQ9UGL1 1544 aa18.24■□□□□ 0.51
COL17A1-202ENST00000369733 PPP1R12BO60237 982 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 GABPB1Q06547 395 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 JARID2Q92833 1246 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 FBXO31Q5XUX0 539 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 SOS1Q07889 1333 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 PA2G4Q9UQ80 394 aaKnown RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 GCOM1H8Y6P7 765 aaPredicted RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 MYZAPP0CAP1 466 aa18.23■□□□□ 0.51
COL17A1-202ENST00000369733 ZNF75DP51815 510 aa18.23■□□□□ 0.51
COL17A1-202ENST00000369733 PUF60Q9UHX1 559 aaKnown RBP18.23■□□□□ 0.51
COL17A1-202ENST00000369733 STARD3NLO95772 234 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 TTF1Q15361 905 aaPredicted RBP18.22■□□□□ 0.51
COL17A1-202ENST00000369733 GAS2L3Q86XJ1 694 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 C10orf67Q8IYJ2 551 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 UTP14AQ9BVJ6 771 aaKnown RBP18.22■□□□□ 0.51
COL17A1-202ENST00000369733 FSD2A1L4K1 749 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 TRIM21P19474 475 aaKnown RBP18.22■□□□□ 0.51
COL17A1-202ENST00000369733 TRIM47Q96LD4 638 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 PTPDC1A2A3K4 754 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 ALDH1L1O75891 902 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 MICALL1Q8N3F8 863 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 ACEP12821 1306 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 CYLC1P35663 651 aaPredicted RBP18.22■□□□□ 0.51
COL17A1-202ENST00000369733 SMC1AQ14683 1233 aaKnown RBP18.22■□□□□ 0.51
COL17A1-202ENST00000369733 CBX8Q9HC52 389 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 LZTFL1Q9NQ48 299 aa18.22■□□□□ 0.51
COL17A1-202ENST00000369733 RMND1Q9NWS8 449 aa18.22■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms