RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PPM1EQ8WY54 764 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 SIRT1Q96EB6 747 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 CRACR2AQ9BSW2 395 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 DNMBPQ6XZF7 1577 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 PI4KAP2A4QPH2 592 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 SPDYE3A6NKU9 549 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 PI4KAP1Q8N8J0 262 aa12.57□□□□□ -0.4
CLIP1-203ENST00000361654 NUP88Q99567 741 aaPredicted RBP12.57□□□□□ -0.4
CLIP1-203ENST00000361654 TOP1P11387 765 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 ALS2CR12Q96Q35 445 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 CCDC113Q9H0I3 377 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 GPHNQ9NQX3 736 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 PICK1Q9NRD5 415 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 LIMCH1Q9UPQ0 1083 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 IVNS1ABPQ9Y6Y0 642 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 MCM5P33992 734 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 IFFO1Q0D2I5 559 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 IFIT1BQ5T764 474 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 SKAP1Q86WV1 359 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 TMOD4Q9NZQ9 345 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 LPXNO60711 386 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 MAP9Q49MG5 647 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 MICU3Q86XE3 530 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 NAA15Q9BXJ9 866 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 RMND1Q9NWS8 449 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 SLC4A4Q9Y6R1 1079 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 NCOA1Q15788 1441 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 UHRF1BP1LA0JNW5 1464 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 SMC1AQ14683 1233 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 IFI16Q16666 785 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 ZMYND15Q9H091 742 aa12.56□□□□□ -0.4
CLIP1-203ENST00000361654 SMARCA5O60264 1052 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 SREK1Q8WXA9 508 aaKnown RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 ORC3Q9UBD5 711 aaPredicted RBP12.56□□□□□ -0.4
CLIP1-203ENST00000361654 FSD2A1L4K1 749 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 GUCY1B3Q02153 619 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 MSANTD4Q8NCY6 345 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 SSH1Q8WYL5 1049 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 EXOC1Q9NV70 894 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 IL15P40933 162 aaPredicted RBP12.55□□□□□ -0.4
CLIP1-203ENST00000361654 SLC4A8Q2Y0W8 1093 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 SLC26A6Q9BXS9 759 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 FANCAO15360 1455 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 AKAP4Q5JQC9 854 aa12.55□□□□□ -0.4
CLIP1-203ENST00000361654 SUPT6HQ7KZ85 1726 aaKnown RBP12.55□□□□□ -0.4
CLIP1-203ENST00000361654 TMCO5BA8MYB1 307 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 GNAT2P19087 354 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 CCT2P78371 535 aaKnown RBP12.54□□□□□ -0.4
CLIP1-203ENST00000361654 TTC6Q86TZ1 520 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 XAGE3Q8WTP9 111 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 TTC12Q9H892 705 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-203ENST00000361654 C14orf93Q9H972 538 aaKnown RBP12.54□□□□□ -0.4
CLIP1-203ENST00000361654 HMGXB3Q12766 1538 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 TCIRG1Q13488 830 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 GOPCQ9HD26 462 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 IKBKGQ9Y6K9 419 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 ALDH1L1O75891 902 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 CALM1P0DP23 149 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 CALM2P0DP24 149 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 CALM3P0DP25 149 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 TNNT1P13805 278 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 CCDC102AQ96A19 550 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 ZNF408Q9H9D4 720 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 WWC3Q9ULE0 1092 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 KIF14Q15058 1648 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 ZBTB24O43167 697 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-203ENST00000361654 NEK1Q96PY6 1258 aa12.54□□□□□ -0.4
CLIP1-203ENST00000361654 DHX29Q7Z478 1369 aaKnown RBP12.53□□□□□ -0.4
CLIP1-203ENST00000361654 ADGRF5Q8IZF2 1346 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 UBXN4Q92575 508 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 C11orf95C9JLR9 678 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-203ENST00000361654 GNPATO15228 680 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 NAPAP54920 295 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 HAND2P61296 217 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 KIF4BQ2VIQ3 1234 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 CNBD1Q8NA66 436 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 MAGEB6P1A0A0J9YX57 407 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 LDHBP07195 334 aaKnown RBP12.53□□□□□ -0.4
CLIP1-203ENST00000361654 IQGAP2Q13576 1575 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 ESPNB1AK53 854 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 RIMBP2O15034 1052 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 COPS6Q7L5N1 327 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 HEATR3Q7Z4Q2 680 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 GRPEL1Q9HAV7 217 aa12.53□□□□□ -0.4
CLIP1-203ENST00000361654 ZBTB43O43298 467 aa12.52□□□□□ -0.4
CLIP1-203ENST00000361654 CCDC144CPQ8IYA2 1237 aa12.52□□□□□ -0.4
CLIP1-203ENST00000361654 RRP36Q96EU6 259 aaKnown RBP12.52□□□□□ -0.4
CLIP1-203ENST00000361654 MAST3O60307 1309 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 BACH1O14867 736 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 FSIP1Q8NA03 581 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 CCNL1Q9UK58 526 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-203ENST00000361654 SLU7O95391 586 aaKnown RBP12.52□□□□□ -0.41
CLIP1-203ENST00000361654 CAMK4Q16566 473 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 CCDC102BQ68D86 513 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 SPAG5Q96R06 1193 aa12.52□□□□□ -0.41
CLIP1-203ENST00000361654 NAP1L4Q99733 375 aaKnown RBP12.52□□□□□ -0.41
CLIP1-203ENST00000361654 NOS1P29475 1434 aa12.51□□□□□ -0.41
CLIP1-203ENST00000361654 CCDC87Q9NVE4 849 aa12.51□□□□□ -0.41
CLIP1-203ENST00000361654 IQSEC3Q9UPP2 1182 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms