RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 SMARCA5O60264 1052 aaPredicted RBP24.65■■□□□ 1.54
CLN3-205ENST00000359984 RAB11FIP3O75154 756 aa24.65■■□□□ 1.54
CLN3-205ENST00000359984 HSP90AB4PQ58FF6 505 aa24.65■■□□□ 1.54
CLN3-205ENST00000359984 PDE4AP27815 886 aa24.64■■□□□ 1.54
CLN3-205ENST00000359984 RGS3P49796 1198 aa24.64■■□□□ 1.54
CLN3-205ENST00000359984 GREM2Q9H772 168 aa24.64■■□□□ 1.54
CLN3-205ENST00000359984 DDX60Q8IY21 1712 aaKnown RBP24.64■■□□□ 1.54
CLN3-205ENST00000359984 ABCC12Q96J65 1359 aa24.64■■□□□ 1.54
CLN3-205ENST00000359984 DDR1Q08345 913 aa24.64■■□□□ 1.53
CLN3-205ENST00000359984 CCDC57Q2TAC2 916 aa24.64■■□□□ 1.53
CLN3-205ENST00000359984 SIL1Q9H173 461 aa24.64■■□□□ 1.53
CLN3-205ENST00000359984 LRRCC1Q9C099 1032 aa24.63■■□□□ 1.53
CLN3-205ENST00000359984 OS9Q13438 667 aaPredicted RBP24.62■■□□□ 1.53
CLN3-205ENST00000359984 QSER1Q2KHR3 1735 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 CCDC24Q8N4L8 307 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 ZBTB47Q9UFB7 747 aaPredicted RBP24.62■■□□□ 1.53
CLN3-205ENST00000359984 LAMB2P55268 1798 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 POLRMTO00411 1230 aaKnown RBP24.62■■□□□ 1.53
CLN3-205ENST00000359984 SERPINB2P05120 415 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 G3BP1Q13283 466 aaKnown RBP eCLIP24.62■■□□□ 1.53
CLN3-205ENST00000359984 IFIT5Q13325 482 aaKnown RBP24.62■■□□□ 1.53
CLN3-205ENST00000359984 CNBD1Q8NA66 436 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 RHPN1Q8TCX5 695 aa24.62■■□□□ 1.53
CLN3-205ENST00000359984 ZNF594Q96JF6 807 aaPredicted RBP24.62■■□□□ 1.53
CLN3-205ENST00000359984 MYH3P11055 1940 aa24.61■■□□□ 1.53
CLN3-205ENST00000359984 ITGA6P23229 1130 aa24.61■■□□□ 1.53
CLN3-205ENST00000359984 C3orf67Q6ZVT6 689 aa24.61■■□□□ 1.53
CLN3-205ENST00000359984 NPHP1O15259 732 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 KIF1BPQ96EK5 621 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 BCL11AQ9H165 835 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 CCDC152Q4G0S7 254 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 MSL1Q68DK7 614 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 PRR5LQ6MZQ0 368 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 ERC1Q8IUD2 1116 aa24.6■■□□□ 1.53
CLN3-205ENST00000359984 ANKRD18BA2A2Z9 1011 aa24.59■■□□□ 1.53
CLN3-205ENST00000359984 SF3B3Q15393 1217 aaKnown RBP24.59■■□□□ 1.53
CLN3-205ENST00000359984 C16orf71Q8IYS4 520 aaPredicted RBP24.59■■□□□ 1.53
CLN3-205ENST00000359984 PDGFDQ9GZP0 370 aaPredicted RBP24.59■■□□□ 1.53
CLN3-205ENST00000359984 SASH1O94885 1247 aa24.58■■□□□ 1.53
CLN3-205ENST00000359984 IL1RAPL2Q9NP60 686 aa24.58■■□□□ 1.53
CLN3-205ENST00000359984 NLRP3Q96P20 1036 aa24.58■■□□□ 1.52
CLN3-205ENST00000359984 RTL9Q8NET4 1388 aa24.57■■□□□ 1.52
CLN3-205ENST00000359984 TAF7LQ5H9L4 462 aa24.57■■□□□ 1.52
CLN3-205ENST00000359984 ATG9AQ7Z3C6 839 aa24.57■■□□□ 1.52
CLN3-205ENST00000359984 EYA2O00167 538 aa24.56■■□□□ 1.52
CLN3-205ENST00000359984 MMP10P09238 476 aa24.56■■□□□ 1.52
CLN3-205ENST00000359984 LRRC24Q50LG9 513 aa24.56■■□□□ 1.52
CLN3-205ENST00000359984 PUS3Q9BZE2 481 aaKnown RBP24.56■■□□□ 1.52
CLN3-205ENST00000359984 SEC31BQ9NQW1 1179 aa24.56■■□□□ 1.52
CLN3-205ENST00000359984 OTUD7AQ8TE49 926 aaPredicted RBP24.55■■□□□ 1.52
CLN3-205ENST00000359984 CIAO1O76071 339 aa24.55■■□□□ 1.52
CLN3-205ENST00000359984 ST5P78524 1137 aa24.55■■□□□ 1.52
CLN3-205ENST00000359984 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.55■■□□□ 1.52
CLN3-205ENST00000359984 FBXO3Q9UK99 471 aa24.54■■□□□ 1.52
CLN3-205ENST00000359984 IL15P40933 162 aaPredicted RBP24.53■■□□□ 1.52
CLN3-205ENST00000359984 PARP3Q9Y6F1 533 aa24.53■■□□□ 1.52
CLN3-205ENST00000359984 RIC1Q4ADV7 1423 aa24.53■■□□□ 1.52
CLN3-205ENST00000359984 PLEKHM2Q8IWE5 1019 aa24.53■■□□□ 1.52
CLN3-205ENST00000359984 TFCP2Q12800 502 aa24.52■■□□□ 1.52
CLN3-205ENST00000359984 LDHAL6AQ6ZMR3 332 aa24.52■■□□□ 1.52
CLN3-205ENST00000359984 ILDR2Q71H61 639 aa24.52■■□□□ 1.52
CLN3-205ENST00000359984 TNRC6CQ9HCJ0 1690 aaKnown RBP24.51■■□□□ 1.51
CLN3-205ENST00000359984 CLASRPQ8N2M8 674 aaKnown RBP24.51■■□□□ 1.51
CLN3-205ENST00000359984 RIPOR2Q9Y4F9 1068 aa24.51■■□□□ 1.51
CLN3-205ENST00000359984 NRXN2Q9P2S2 1712 aa24.5■■□□□ 1.51
CLN3-205ENST00000359984 SLC16A10Q8TF71 515 aa24.5■■□□□ 1.51
CLN3-205ENST00000359984 SALL3Q9BXA9 1300 aa24.5■■□□□ 1.51
CLN3-205ENST00000359984 CDC5LQ99459 802 aaKnown RBP24.49■■□□□ 1.51
CLN3-205ENST00000359984 CNNM1Q9NRU3 951 aa24.49■■□□□ 1.51
CLN3-205ENST00000359984 CASZ1Q86V15 1759 aa24.49■■□□□ 1.51
CLN3-205ENST00000359984 EAF2Q96CJ1 260 aaPredicted RBP24.48■■□□□ 1.51
CLN3-205ENST00000359984 LRP5O75197 1615 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 IGHMBP2P38935 993 aaKnown RBP24.47■■□□□ 1.51
CLN3-205ENST00000359984 AACSQ86V21 672 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 MPHOSPH8Q99549 860 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 COL4A1P02462 1669 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 PDE1AP54750 535 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 CRY2Q49AN0 593 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 BRIP1Q9BX63 1249 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 CEP126Q9P2H0 1117 aa24.47■■□□□ 1.51
CLN3-205ENST00000359984 KLRG2A4D1S0 409 aaPredicted RBP24.46■■□□□ 1.51
CLN3-205ENST00000359984 MX1P20591 662 aa24.46■■□□□ 1.51
CLN3-205ENST00000359984 R3HDM1Q15032 1099 aaKnown RBP24.46■■□□□ 1.51
CLN3-205ENST00000359984 TNNI3KQ59H18 835 aa24.46■■□□□ 1.51
CLN3-205ENST00000359984 DDX46Q7L014 1031 aaKnown RBP24.46■■□□□ 1.51
CLN3-205ENST00000359984 ANKRD18AQ8IVF6 992 aa24.46■■□□□ 1.51
CLN3-205ENST00000359984 CELF1Q92879 486 aaKnown RBP24.46■■□□□ 1.51
CLN3-205ENST00000359984 FPGT-TNNI3KV9GXZ4 949 aa24.46■■□□□ 1.51
CLN3-205ENST00000359984 IFIT2P09913 472 aaKnown RBP24.45■■□□□ 1.51
CLN3-205ENST00000359984 OSBPL3Q9H4L5 887 aa24.45■■□□□ 1.51
CLN3-205ENST00000359984 STAP2Q9UGK3 403 aa24.45■■□□□ 1.51
CLN3-205ENST00000359984 METTL24Q5JXM2 366 aa24.45■■□□□ 1.5
CLN3-205ENST00000359984 CCDC8Q9H0W5 538 aaPredicted RBP24.45■■□□□ 1.5
CLN3-205ENST00000359984 GPR108Q9NPR9 543 aa24.45■■□□□ 1.5
CLN3-205ENST00000359984 TSHZ3Q63HK5 1081 aa24.44■■□□□ 1.5
CLN3-205ENST00000359984 RPS8P62241 208 aaKnown RBP24.43■■□□□ 1.5
CLN3-205ENST00000359984 TAF1P21675 1872 aa24.43■■□□□ 1.5
CLN3-205ENST00000359984 MROH5Q6ZUA9 1318 aa24.43■■□□□ 1.5
CLN3-205ENST00000359984 VGLL2Q8N8G2 317 aa24.43■■□□□ 1.5
CLN3-205ENST00000359984 RPGRQ92834 1020 aaKnown RBP24.43■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms