RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RNF20Q5VTR2 975 aa24.95■■□□□ 1.58
CCDC88B-203ENST00000359902 ZNF335Q9H4Z2 1342 aaPredicted RBP24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 NUP188Q5SRE5 1749 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 STRCQ7RTU9 1775 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 LRSAM1Q6UWE0 723 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 NDUFB9Q9Y6M9 179 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 SYCE3A1L190 88 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 ST3GAL1Q11201 340 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 ATG9AQ7Z3C6 839 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 HAUS7Q99871 368 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 ZBTB3Q9H5J0 574 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 CHMP3Q9Y3E7 222 aa24.94■■□□□ 1.58
CCDC88B-203ENST00000359902 TNS2Q63HR2 1409 aa24.93■■□□□ 1.58
CCDC88B-203ENST00000359902 GADD45BO75293 160 aaPredicted RBP24.93■■□□□ 1.58
CCDC88B-203ENST00000359902 CCDC191Q8NCU4 936 aa24.93■■□□□ 1.58
CCDC88B-203ENST00000359902 TAF6LQ9Y6J9 622 aa24.93■■□□□ 1.58
CCDC88B-203ENST00000359902 SHANK3Q9BYB0 1731 aa24.93■■□□□ 1.58
CCDC88B-203ENST00000359902 GJB2P29033 226 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 EVA1CP58658 441 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 TSGA10IPQ3SY00 556 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 TMEM87AQ8NBN3 555 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 TRIM44Q96DX7 344 aaPredicted RBP24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 TPCN1Q9ULQ1 816 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 ABCA3Q99758 1704 aa24.92■■□□□ 1.58
CCDC88B-203ENST00000359902 USPL1Q5W0Q7 1092 aa24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 ANP32BQ92688 251 aaKnown RBP24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 DNAJC2Q99543 621 aaKnown RBP24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 F13A1P00488 732 aa24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 BLOC1S2Q6QNY1 142 aa24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 HMG20BQ9P0W2 317 aa24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 RFX7Q2KHR2 1363 aa24.91■■□□□ 1.58
CCDC88B-203ENST00000359902 NECAB1Q8N987 351 aa24.9■■□□□ 1.58
CCDC88B-203ENST00000359902 ALDH8A1Q9H2A2 487 aaPredicted RBP24.9■■□□□ 1.58
CCDC88B-203ENST00000359902 TCHHQ07283 1943 aa24.9■■□□□ 1.58
CCDC88B-203ENST00000359902 TJP1Q07157 1748 aa24.9■■□□□ 1.58
CCDC88B-203ENST00000359902 CNPY2Q9Y2B0 182 aa24.9■■□□□ 1.58
CCDC88B-203ENST00000359902 ESPNB1AK53 854 aa24.89■■□□□ 1.58
CCDC88B-203ENST00000359902 DTNBO60941 627 aa24.89■■□□□ 1.58
CCDC88B-203ENST00000359902 RPS6KB1P23443 525 aa24.89■■□□□ 1.58
CCDC88B-203ENST00000359902 CLCN1P35523 988 aa24.89■■□□□ 1.58
CCDC88B-203ENST00000359902 CHGBP05060 677 aa24.89■■□□□ 1.57
CCDC88B-203ENST00000359902 GPR108Q9NPR9 543 aa24.89■■□□□ 1.57
CCDC88B-203ENST00000359902 ZNF609O15014 1411 aa24.88■■□□□ 1.57
CCDC88B-203ENST00000359902 MTMR6Q9Y217 621 aa24.88■■□□□ 1.57
CCDC88B-203ENST00000359902 IL15P40933 162 aaPredicted RBP24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 DDX46Q7L014 1031 aaKnown RBP24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 SYAP1Q96A49 352 aaPredicted RBP24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 ANKRD1Q15327 319 aa24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 TCEANC2Q96MN5 208 aa24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 NEUROD6Q96NK8 337 aa24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 SEC62Q99442 399 aaKnown RBP24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 ATP6V1DQ9Y5K8 247 aa24.87■■□□□ 1.57
CCDC88B-203ENST00000359902 TIMM10P62072 90 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 KBTBD3Q8NAB2 608 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 TMOD3Q9NYL9 352 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 TOB2Q14106 344 aaPredicted RBP24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 MCMDC2Q4G0Z9 681 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 CCDC129Q6ZRS4 1044 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 ISCA1Q9BUE6 129 aa24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 CCDC9Q9Y3X0 531 aaKnown RBP24.86■■□□□ 1.57
CCDC88B-203ENST00000359902 EYA2O00167 538 aa24.85■■□□□ 1.57
CCDC88B-203ENST00000359902 LRRC24Q50LG9 513 aa24.85■■□□□ 1.57
CCDC88B-203ENST00000359902 ZNF594Q96JF6 807 aaPredicted RBP24.85■■□□□ 1.57
CCDC88B-203ENST00000359902 ATG3Q9NT62 314 aa24.85■■□□□ 1.57
CCDC88B-203ENST00000359902 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.85■■□□□ 1.57
CCDC88B-203ENST00000359902 TOGARAM1Q9Y4F4 1720 aa24.84■■□□□ 1.57
CCDC88B-203ENST00000359902 KRT32Q14532 448 aa24.84■■□□□ 1.57
CCDC88B-203ENST00000359902 TCIRG1Q13488 830 aa24.84■■□□□ 1.57
CCDC88B-203ENST00000359902 U3KPZ7 1027 aaPredicted RBP24.84■■□□□ 1.57
CCDC88B-203ENST00000359902 CIAO1O76071 339 aa24.83■■□□□ 1.57
CCDC88B-203ENST00000359902 PAG1Q9NWQ8 432 aa24.83■■□□□ 1.56
CCDC88B-203ENST00000359902 ASAP1Q9ULH1 1129 aa24.83■■□□□ 1.56
CCDC88B-203ENST00000359902 PALLDQ8WX93 1383 aa24.82■■□□□ 1.56
CCDC88B-203ENST00000359902 GOLIM4O00461 696 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 PIGBQ92521 554 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 PUS3Q9BZE2 481 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 SH3TC1Q8TE82 1336 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 UBE2HP62256 183 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 LARP1BQ659C4 914 aaKnown RBP24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 PDLIM2Q96JY6 352 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 NEK1Q96PY6 1258 aa24.81■■□□□ 1.56
CCDC88B-203ENST00000359902 DNM1Q05193 864 aaKnown RBP24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 TRIM28Q13263 835 aaKnown RBP24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 DNAJC10Q8IXB1 793 aa24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 TEX13AQ9BXU3 409 aaPredicted RBP24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 TSPY26PQ9H489 355 aa24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 VPS37CA5D8V6 355 aaPredicted RBP24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 PHF14O94880 888 aa24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 CYP21A2P08686 494 aa24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 VSIG10Q8N0Z9 540 aa24.8■■□□□ 1.56
CCDC88B-203ENST00000359902 A0A1B0GUL7 405 aa24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 FIBPO43427 364 aa24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 PDIA4P13667 645 aaKnown RBP24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 TICAM2Q86XR7 235 aa24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 ZNF330Q9Y3S2 320 aaPredicted RBP24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 NHSL1Q5SYE7 1610 aa24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 HELLSQ9NRZ9 838 aa24.79■■□□□ 1.56
CCDC88B-203ENST00000359902 SLFNL1Q499Z3 407 aa24.78■■□□□ 1.56
CCDC88B-203ENST00000359902 KDM4FA0A1W2PPD8 638 aa24.78■■□□□ 1.56
CCDC88B-203ENST00000359902 BTG4Q9NY30 223 aa24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms