RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 NDUFB9Q9Y6M9 179 aa20.88■□□□□ 0.93
DDX28-201ENST00000332395 ROBO1Q9Y6N7 1651 aa20.88■□□□□ 0.93
DDX28-201ENST00000332395 SLC27A2O14975 620 aa20.87■□□□□ 0.93
DDX28-201ENST00000332395 DNAJC2Q99543 621 aaKnown RBP20.87■□□□□ 0.93
DDX28-201ENST00000332395 STARD3NLO95772 234 aa20.87■□□□□ 0.93
DDX28-201ENST00000332395 GPR108Q9NPR9 543 aa20.87■□□□□ 0.93
DDX28-201ENST00000332395 RPAP1Q9BWH6 1393 aaPredicted RBP20.87■□□□□ 0.93
DDX28-201ENST00000332395 RNF20Q5VTR2 975 aa20.86■□□□□ 0.93
DDX28-201ENST00000332395 KIF6Q6ZMV9 814 aa20.86■□□□□ 0.93
DDX28-201ENST00000332395 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.86■□□□□ 0.93
DDX28-201ENST00000332395 PLCH1Q4KWH8 1693 aa20.86■□□□□ 0.93
DDX28-201ENST00000332395 WDR33Q9C0J8 1336 aaKnown RBP20.86■□□□□ 0.93
DDX28-201ENST00000332395 EYA2O00167 538 aa20.86■□□□□ 0.93
DDX28-201ENST00000332395 NCLP19338 710 aaKnown RBP20.86■□□□□ 0.93
DDX28-201ENST00000332395 ZNF594Q96JF6 807 aaPredicted RBP20.86■□□□□ 0.93
DDX28-201ENST00000332395 COL16A1Q07092 1604 aaPredicted RBP20.85■□□□□ 0.93
DDX28-201ENST00000332395 LARGE1O95461 756 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 TRIM28Q13263 835 aaKnown RBP20.85■□□□□ 0.93
DDX28-201ENST00000332395 LRRC24Q50LG9 513 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 CAVIN1Q6NZI2 390 aaKnown RBP20.85■□□□□ 0.93
DDX28-201ENST00000332395 NEUROD6Q96NK8 337 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 COL22A1Q8NFW1 1626 aaPredicted RBP20.85■□□□□ 0.93
DDX28-201ENST00000332395 BCL9O00512 1426 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 TAF5LO75529 589 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 PSMA5P28066 241 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 GPT2Q8TD30 523 aa20.85■□□□□ 0.93
DDX28-201ENST00000332395 AHDC1Q5TGY3 1603 aaPredicted RBP20.84■□□□□ 0.93
DDX28-201ENST00000332395 LRP6O75581 1613 aa20.84■□□□□ 0.93
DDX28-201ENST00000332395 CIAO1O76071 339 aa20.84■□□□□ 0.93
DDX28-201ENST00000332395 ZSCAN31Q96LW9 406 aaPredicted RBP20.84■□□□□ 0.93
DDX28-201ENST00000332395 CCDC9Q9Y3X0 531 aaKnown RBP20.84■□□□□ 0.93
DDX28-201ENST00000332395 TIMM10P62072 90 aa20.83■□□□□ 0.93
DDX28-201ENST00000332395 DDX46Q7L014 1031 aaKnown RBP20.83■□□□□ 0.93
DDX28-201ENST00000332395 SH2B1Q9NRF2 756 aaPredicted RBP20.83■□□□□ 0.93
DDX28-201ENST00000332395 ZNF609O15014 1411 aa20.83■□□□□ 0.93
DDX28-201ENST00000332395 HMG20BQ9P0W2 317 aa20.83■□□□□ 0.92
DDX28-201ENST00000332395 SMC3Q9UQE7 1217 aa20.83■□□□□ 0.92
DDX28-201ENST00000332395 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.82■□□□□ 0.92
DDX28-201ENST00000332395 KBTBD3Q8NAB2 608 aa20.82■□□□□ 0.92
DDX28-201ENST00000332395 MAP3K15Q6ZN16 1313 aa20.82■□□□□ 0.92
DDX28-201ENST00000332395 PCCAP05165 728 aaPredicted RBP20.82■□□□□ 0.92
DDX28-201ENST00000332395 USPL1Q5W0Q7 1092 aa20.82■□□□□ 0.92
DDX28-201ENST00000332395 CCDC83Q8IWF9 413 aa20.82■□□□□ 0.92
DDX28-201ENST00000332395 EXOC5O00471 708 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 CHGBP05060 677 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 ZNF445P59923 1031 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 CCDC57Q2TAC2 916 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 ZSCAN23Q3MJ62 389 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 SLC4A9Q96Q91 983 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 PUS3Q9BZE2 481 aaKnown RBP20.81■□□□□ 0.92
DDX28-201ENST00000332395 TAF6LQ9Y6J9 622 aa20.81■□□□□ 0.92
DDX28-201ENST00000332395 WNK3Q9BYP7 1800 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 TSGA10IPQ3SY00 556 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 BLOC1S2Q6QNY1 142 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 GIGYF2Q6Y7W6 1299 aaKnown RBP20.8■□□□□ 0.92
DDX28-201ENST00000332395 FAM89AQ96GI7 184 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 PALLDQ8WX93 1383 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 A0A1B0GUL7 405 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 COL9A3Q14050 684 aaPredicted RBP20.8■□□□□ 0.92
DDX28-201ENST00000332395 ME3Q16798 604 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 MCMDC2Q4G0Z9 681 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 ZBTB38Q8NAP3 1195 aaPredicted RBP20.8■□□□□ 0.92
DDX28-201ENST00000332395 SEC62Q99442 399 aaKnown RBP20.8■□□□□ 0.92
DDX28-201ENST00000332395 PLA2G12BQ9BX93 195 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 PAG1Q9NWQ8 432 aa20.8■□□□□ 0.92
DDX28-201ENST00000332395 GOLIM4O00461 696 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 CYP19A1P11511 503 aaPredicted RBP20.79■□□□□ 0.92
DDX28-201ENST00000332395 SYT1P21579 422 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 CCDC129Q6ZRS4 1044 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 STX6O43752 255 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 MBD3O95983 291 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 ZSCAN22P10073 491 aaPredicted RBP20.79■□□□□ 0.92
DDX28-201ENST00000332395 RPS6KB1P23443 525 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 SYTL4Q96C24 671 aaPredicted RBP20.79■□□□□ 0.92
DDX28-201ENST00000332395 TPCN1Q9ULQ1 816 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 SH3TC1Q8TE82 1336 aa20.79■□□□□ 0.92
DDX28-201ENST00000332395 ST3GAL1Q11201 340 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 HLFQ16534 295 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 FOXD4L6Q3SYB3 417 aaPredicted RBP20.78■□□□□ 0.92
DDX28-201ENST00000332395 FOXD4L3Q6VB84 417 aaPredicted RBP20.78■□□□□ 0.92
DDX28-201ENST00000332395 CEP126Q9P2H0 1117 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 FBXO3Q9UK99 471 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 KAT6BQ8WYB5 2073 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 GJB2P29033 226 aa20.78■□□□□ 0.92
DDX28-201ENST00000332395 RBM27Q9P2N5 1060 aaKnown RBP20.78■□□□□ 0.92
DDX28-201ENST00000332395 NSFL1CQ9UNZ2 370 aaKnown RBP20.78■□□□□ 0.92
DDX28-201ENST00000332395 CSF1RP07333 972 aa20.77■□□□□ 0.92
DDX28-201ENST00000332395 ANKRD1Q15327 319 aa20.77■□□□□ 0.92
DDX28-201ENST00000332395 CCDC85AQ96PX6 553 aaPredicted RBP20.77■□□□□ 0.92
DDX28-201ENST00000332395 ALDH8A1Q9H2A2 487 aaPredicted RBP20.77■□□□□ 0.92
DDX28-201ENST00000332395 ZBTB1Q9Y2K1 713 aa20.77■□□□□ 0.92
DDX28-201ENST00000332395 U3KPZ7 1027 aaPredicted RBP20.77■□□□□ 0.92
DDX28-201ENST00000332395 IFIT1P09914 478 aaKnown RBP20.76■□□□□ 0.91
DDX28-201ENST00000332395 CLCN1P35523 988 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 KRT32Q14532 448 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 TICAM2Q86XR7 235 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 CDHR2Q9BYE9 1310 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 GPTP24298 496 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 HSP90AB3PQ58FF7 597 aa20.76■□□□□ 0.91
DDX28-201ENST00000332395 NLRP10Q86W26 655 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 124.9 ms