RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 SETD1AO15047 1707 aaKnown RBP15.25■□□□□ 0.03
HMGCS1-201ENST00000325110 USP16Q9Y5T5 823 aa15.25■□□□□ 0.03
HMGCS1-201ENST00000325110 DNAJC25Q9H1X3 360 aa15.25■□□□□ 0.03
HMGCS1-201ENST00000325110 DIP2AQ14689 1571 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 RPS6KB1P23443 525 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 MAP4K1Q92918 833 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 AKAP12Q02952 1782 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 LMBR1LQ6UX01 489 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 C16orf45Q96MC5 204 aaPredicted RBP15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 SNRKQ9NRH2 765 aa15.24■□□□□ 0.03
HMGCS1-201ENST00000325110 A0A087WWV3 80 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 DYNC1I1O14576 645 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 IGKV5-2P06315 115 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 FKBP4Q02790 459 aaKnown RBP eCLIP15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 WASHC4Q2M389 1173 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 CCDC186Q7Z3E2 898 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 SCAND2PQ9GZW5 306 aaPredicted RBP15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 TCHHQ07283 1943 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 GCKRQ14397 625 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 SF3A1Q15459 793 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 PIBF1Q8WXW3 757 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 CABP4P57796 275 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 FAM200AQ8TCP9 573 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 ZBTB3Q9H5J0 574 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 PYCARDQ9ULZ3 195 aa15.23■□□□□ 0.03
HMGCS1-201ENST00000325110 NEURL1BA8MQ27 555 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 EPB41L2O43491 1005 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 ZNF165P49910 485 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 TIMM10P62072 90 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 TAF7LQ5H9L4 462 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 ERCC4Q92889 916 aaPredicted RBP15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 PKNOX2Q96KN3 472 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 FMNL2Q96PY5 1086 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 TM6SF1Q9BZW5 370 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 DBNLQ9UJU6 430 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 FILIP1Q7Z7B0 1213 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 CEMIPQ8WUJ3 1361 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 ME1P48163 572 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 HAND2P61296 217 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 ST3GAL1Q11201 340 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 KAZALD1Q96I82 304 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 NCOA5Q9HCD5 579 aaKnown RBP15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 KIF3AQ9Y496 699 aa15.22■□□□□ 0.03
HMGCS1-201ENST00000325110 HMGN5P82970 282 aaKnown RBP15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 HSP90AB3PQ58FF7 597 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 CCDC73Q6ZRK6 1079 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 ARHGEF25Q86VW2 580 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 MAP7D2Q96T17 732 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 APOBRQ0VD83 1088 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 LRMPQ12912 555 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 TMEM87AQ8NBN3 555 aa15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 FTOQ9C0B1 505 aaKnown RBP eCLIP15.21■□□□□ 0.03
HMGCS1-201ENST00000325110 NR1I2O75469 434 aa15.21■□□□□ 0.02
HMGCS1-201ENST00000325110 MTX1Q13505 466 aa15.21■□□□□ 0.02
HMGCS1-201ENST00000325110 TNNI3KQ59H18 835 aa15.21■□□□□ 0.02
HMGCS1-201ENST00000325110 FPGT-TNNI3KV9GXZ4 949 aa15.21■□□□□ 0.02
HMGCS1-201ENST00000325110 KRT32Q14532 448 aa15.2■□□□□ 0.02
HMGCS1-201ENST00000325110 LEO1Q8WVC0 666 aaPredicted RBP15.2■□□□□ 0.02
HMGCS1-201ENST00000325110 SDF4Q9BRK5 362 aa15.2■□□□□ 0.02
HMGCS1-201ENST00000325110 CBX1P83916 185 aa15.2■□□□□ 0.02
HMGCS1-201ENST00000325110 TAF5LO75529 589 aa15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 ZNF594Q96JF6 807 aaPredicted RBP15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 CBX8Q9HC52 389 aa15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 AP5Z1O43299 807 aa15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 KINO60870 393 aaKnown RBP15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 NRBP1Q9UHY1 535 aa15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 NPHP3Q7Z494 1330 aa15.19■□□□□ 0.02
HMGCS1-201ENST00000325110 TOB2Q14106 344 aaPredicted RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 TPD52L1Q16890 204 aaPredicted RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 METTL22Q9BUU2 404 aaPredicted RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 RGPD8O14715 1765 aaPredicted RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 SNRPA1P09661 255 aaKnown RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 HMG20BQ9P0W2 317 aa15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 MCMDC2Q4G0Z9 681 aa15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 DDX19AQ9NUU7 478 aaKnown RBP15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 CLIP2Q9UDT6 1046 aa15.18■□□□□ 0.02
HMGCS1-201ENST00000325110 SPDYE4A6NLX3 237 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 SLC52A2Q9HAB3 445 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 MRVI1Q9Y6F6 885 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 U3KPZ7 1027 aaPredicted RBP15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 PXDNLA1KZ92 1463 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 CYP21A2P08686 494 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 TERF1P54274 439 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 OTUD7BQ6GQQ9 843 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 IFNL2Q8IZJ0 200 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 UBR1Q8IWV7 1749 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 CPLX1O14810 134 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 IFIT1P09914 478 aaKnown RBP15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 ATF3P18847 181 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 GNL2Q13823 731 aaKnown RBP15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 MYRIPQ8NFW9 859 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 CFAP45Q9UL16 551 aa15.17■□□□□ 0.02
HMGCS1-201ENST00000325110 PXDNQ92626 1479 aa15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 NPHP1O15259 732 aa15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 APPP05067 770 aa15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 POLR3DP05423 398 aaPredicted RBP15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 CCAR1Q8IX12 1150 aaKnown RBP15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 STK11IPQ8N1F8 1099 aa15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 TRMT1Q9NXH9 659 aaKnown RBP15.16■□□□□ 0.02
HMGCS1-201ENST00000325110 ANKARQ7Z5J8 1434 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms