RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 PRPF40BQ6NWY9 871 aaKnown RBP13.74□□□□□ -0.21
PCF11-201ENST00000298281 GSDMBQ8TAX9 411 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 DBF4Q9UBU7 674 aaPredicted RBP13.74□□□□□ -0.21
PCF11-201ENST00000298281 PPP4R4Q6NUP7 873 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 EHBP1Q8NDI1 1231 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 EPRSP07814 1512 aaKnown RBP13.74□□□□□ -0.21
PCF11-201ENST00000298281 NUTM1Q86Y26 1132 aa13.74□□□□□ -0.21
PCF11-201ENST00000298281 GJC1P36383 396 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 NOP9Q86U38 636 aaKnown RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 TMEM110-MUSTN1A8MSY1 372 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 IFIT3O14879 490 aaKnown RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 GOLGA8AA7E2F4 631 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 GOLGA8BA8MQT2 603 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 CDC5LQ99459 802 aaKnown RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 MAK16Q9BXY0 300 aaKnown RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 BOLA2Q9H3K6 86 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 URI1O94763 535 aaPredicted RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 PDE4BQ07343 736 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 USP37Q86T82 979 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 NCAPGQ9BPX3 1015 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 EVI5LQ96CN4 794 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 TBC1D31Q96DN5 1066 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 CGNQ9P2M7 1197 aaKnown RBP13.73□□□□□ -0.21
PCF11-201ENST00000298281 RASA3Q14644 834 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 CCDC40Q4G0X9 1142 aa13.73□□□□□ -0.21
PCF11-201ENST00000298281 RFC1P35251 1148 aaPredicted RBP13.72□□□□□ -0.21
PCF11-201ENST00000298281 CKAP4Q07065 602 aaKnown RBP13.72□□□□□ -0.21
PCF11-201ENST00000298281 CAMK4Q16566 473 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 PSPC1Q8WXF1 523 aaKnown RBP13.72□□□□□ -0.21
PCF11-201ENST00000298281 FAM169AQ9Y6X4 670 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 GOLIM4O00461 696 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 XRCC6P12956 609 aaKnown RBP eCLIP13.72□□□□□ -0.212e-13■□□□□ 8.8
PCF11-201ENST00000298281 ZC3H6P61129 1189 aaKnown RBP13.72□□□□□ -0.21
PCF11-201ENST00000298281 CEP83Q9Y592 693 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 PDE1CQ14123 709 aaPredicted RBP13.72□□□□□ -0.21
PCF11-201ENST00000298281 PRR16Q569H4 304 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 FERMT3Q86UX7 667 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 JADE2Q9NQC1 790 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 BMP15O95972 392 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 VPS52Q8N1B4 723 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 WDR66Q8TBY9 1149 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 HMG20BQ9P0W2 317 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 CLIP2Q9UDT6 1046 aa13.72□□□□□ -0.21
PCF11-201ENST00000298281 HSF2BPO75031 334 aa13.71□□□□□ -0.21
PCF11-201ENST00000298281 PTCD1O75127 700 aaKnown RBP13.71□□□□□ -0.21
PCF11-201ENST00000298281 LRPPRCP42704 1394 aaKnown RBP13.71□□□□□ -0.21
PCF11-201ENST00000298281 DNAAF4Q8WXU2 420 aa13.71□□□□□ -0.21
PCF11-201ENST00000298281 MYD88Q99836 296 aa13.71□□□□□ -0.21
PCF11-201ENST00000298281 TRMT112Q9UI30 125 aaKnown RBP13.71□□□□□ -0.21
PCF11-201ENST00000298281 EEF2P13639 858 aaKnown RBP13.71□□□□□ -0.21
PCF11-201ENST00000298281 STX1AQ16623 288 aa13.71□□□□□ -0.21
PCF11-201ENST00000298281 NKTRP30414 1462 aaKnown RBP13.71□□□□□ -0.22
PCF11-201ENST00000298281 UBA7P41226 1012 aa13.71□□□□□ -0.22
PCF11-201ENST00000298281 HLA-DOAP06340 250 aa13.71□□□□□ -0.22
PCF11-201ENST00000298281 CCDC170Q8IYT3 715 aa13.71□□□□□ -0.22
PCF11-201ENST00000298281 GIPC1O14908 333 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 MCM5P33992 734 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 MSL1Q68DK7 614 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 KIAA1524Q8TCG1 905 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 SWAP70Q9UH65 585 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 NBPF7P0C2Y1 421 aaPredicted RBP13.7□□□□□ -0.22
PCF11-201ENST00000298281 DIXDC1Q155Q3 683 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 TRIM7Q9C029 511 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 CABP5Q9NP86 173 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 AFG3L2Q9Y4W6 797 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 HSPA4P34932 840 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 SPOUT1Q5T280 376 aaKnown RBP13.7□□□□□ -0.22
PCF11-201ENST00000298281 CCDC50Q8IVM0 306 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 NACA2Q9H009 215 aa13.7□□□□□ -0.22
PCF11-201ENST00000298281 NSRP1Q9H0G5 558 aaKnown RBP13.7□□□□□ -0.22
PCF11-201ENST00000298281 RMND1Q9NWS8 449 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 IFT140Q96RY7 1462 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 IARSP41252 1262 aaKnown RBP13.69□□□□□ -0.22
PCF11-201ENST00000298281 TTC21BQ7Z4L5 1316 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 WDR46O15213 610 aaKnown RBP13.69□□□□□ -0.22
PCF11-201ENST00000298281 CALCOCO1Q9P1Z2 691 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 NCAPD3P42695 1498 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 ANKS4BQ8N8V4 417 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
PCF11-201ENST00000298281 KRT13P13646 458 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 FSIP1Q8NA03 581 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 BEGAINQ9BUH8 593 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 C6orf229H3BNL8 230 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 ZNF622Q969S3 477 aaKnown RBP eCLIP13.69□□□□□ -0.221e-7■■□□□ 13.6
PCF11-201ENST00000298281 PKNOX2Q96KN3 472 aa13.69□□□□□ -0.22
PCF11-201ENST00000298281 PSMD6Q15008 389 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 ERMNQ8TAM6 284 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 ZSCAN16Q9H4T2 348 aaPredicted RBP13.68□□□□□ -0.22
PCF11-201ENST00000298281 MNAT1P51948 309 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 ECHDC1Q9NTX5 307 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 IMPG2Q9BZV3 1241 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 TRAF3IP1Q8TDR0 691 aaPredicted RBP13.68□□□□□ -0.22
PCF11-201ENST00000298281 GSTO1P78417 241 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 PLCB3Q01970 1234 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 TMTC2Q8N394 836 aa13.68□□□□□ -0.22
PCF11-201ENST00000298281 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.67□□□□□ -0.221e-25■■□□□ 13.2
PCF11-201ENST00000298281 ZFYP08048 801 aaPredicted RBP13.67□□□□□ -0.22
PCF11-201ENST00000298281 GNL1P36915 607 aaPredicted RBP13.67□□□□□ -0.22
PCF11-201ENST00000298281 KAT14Q9H8E8 782 aa13.67□□□□□ -0.22
PCF11-201ENST00000298281 CCDC102BQ68D86 513 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms