RNA–Protein interactions for RNA: ENST00000295701.9

CNOT9-202, Transcript of CCR4-NOT transcription complex subunit 9, humanhuman

TSL 1 (best) BASIC

Gene CNOT9, Length 1,126 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT9-202ENST00000295701 TNS4Q8IZW8 715 aa12.36□□□□□ -0.43
CNOT9-202ENST00000295701 ZNF541Q9H0D2 1346 aa12.36□□□□□ -0.43
CNOT9-202ENST00000295701 CCDC93Q567U6 631 aa12.35□□□□□ -0.43
CNOT9-202ENST00000295701 SOGA3Q5TF21 947 aa12.35□□□□□ -0.43
CNOT9-202ENST00000295701 TPTE2Q6XPS3 522 aa12.35□□□□□ -0.43
CNOT9-202ENST00000295701 NUTM1Q86Y26 1132 aa12.35□□□□□ -0.43
CNOT9-202ENST00000295701 THUMPD2Q9BTF0 503 aaKnown RBP12.35□□□□□ -0.43
CNOT9-202ENST00000295701 TAF1DQ9H5J8 278 aaPredicted RBP12.35□□□□□ -0.43
CNOT9-202ENST00000295701 ZNF652Q9Y2D9 606 aa12.35□□□□□ -0.43
CNOT9-202ENST00000295701 SCN4AP35499 1836 aa12.34□□□□□ -0.43
CNOT9-202ENST00000295701 HTATSF1O43719 755 aaKnown RBP12.34□□□□□ -0.43
CNOT9-202ENST00000295701 FKBP4Q02790 459 aaKnown RBP eCLIP12.34□□□□□ -0.43
CNOT9-202ENST00000295701 GPR153Q6NV75 609 aa12.34□□□□□ -0.43
CNOT9-202ENST00000295701 TTLL7Q6ZT98 887 aa12.34□□□□□ -0.43
CNOT9-202ENST00000295701 SYNE4Q8N205 404 aa12.34□□□□□ -0.43
CNOT9-202ENST00000295701 TMC2Q8TDI7 906 aa12.34□□□□□ -0.43
CNOT9-202ENST00000295701 RRP7AQ9Y3A4 280 aaKnown RBP12.34□□□□□ -0.43
CNOT9-202ENST00000295701 ABCC12Q96J65 1359 aa12.33□□□□□ -0.44
CNOT9-202ENST00000295701 EAPPQ56P03 285 aaPredicted RBP12.33□□□□□ -0.44
CNOT9-202ENST00000295701 LAMB4A4D0S4 1761 aa12.33□□□□□ -0.44
CNOT9-202ENST00000295701 KDM3BQ7LBC6 1761 aa12.33□□□□□ -0.44
CNOT9-202ENST00000295701 ITGBL1O95965 494 aaPredicted RBP12.32□□□□□ -0.44
CNOT9-202ENST00000295701 MYL6BP14649 208 aa12.32□□□□□ -0.44
CNOT9-202ENST00000295701 GPTP24298 496 aa12.32□□□□□ -0.44
CNOT9-202ENST00000295701 GTF2E1P29083 439 aaPredicted RBP12.32□□□□□ -0.44
CNOT9-202ENST00000295701 EIF4A1P60842 406 aaKnown RBP12.32□□□□□ -0.44
CNOT9-202ENST00000295701 PLEKHF1Q96S99 279 aa12.32□□□□□ -0.44
CNOT9-202ENST00000295701 PASKQ96RG2 1323 aa12.32□□□□□ -0.44
CNOT9-202ENST00000295701 TCERG1O14776 1098 aaKnown RBP12.31□□□□□ -0.44
CNOT9-202ENST00000295701 IARSP41252 1262 aaKnown RBP12.31□□□□□ -0.44
CNOT9-202ENST00000295701 ARSIQ5FYB1 569 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 LDHDQ86WU2 507 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 ZBTB3Q9H5J0 574 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 COL4A5P29400 1685 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 RNF123Q5XPI4 1314 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 MAP3K15Q6ZN16 1313 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 UBN2Q6ZU65 1347 aa12.31□□□□□ -0.44
CNOT9-202ENST00000295701 SNED1Q8TER0 1413 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 IQCA1LA6NCM1 817 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 FZD9O00144 591 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 ALDH1B1P30837 517 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 SUSD4Q5VX71 490 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 RTKN2Q8IZC4 609 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 HACL1Q9UJ83 578 aa12.3□□□□□ -0.44
CNOT9-202ENST00000295701 ERVV-1B6SEH8 477 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 FOXN1O15353 648 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 EPHX2P34913 555 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 VEGFBP49765 207 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 FMR1Q06787 632 aaKnown RBP eCLIP12.29□□□□□ -0.44
CNOT9-202ENST00000295701 NFE2L2Q16236 605 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 CRY2Q49AN0 593 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 MAP1SQ66K74 1059 aaPredicted RBP12.29□□□□□ -0.44
CNOT9-202ENST00000295701 CNTNAP1P78357 1384 aa12.29□□□□□ -0.44
CNOT9-202ENST00000295701 ADAMTSL1Q8N6G6 1762 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 ANXA1P04083 346 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 VARS2Q5ST30 1063 aaKnown RBP12.28□□□□□ -0.44
CNOT9-202ENST00000295701 KRTAP3-3Q9BYR6 98 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 KRTAP3-2Q9BYR7 98 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 NYXQ9GZU5 481 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 RYDENQ9NUL5 291 aaKnown RBP12.28□□□□□ -0.44
CNOT9-202ENST00000295701 GJA3Q9Y6H8 435 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 LTBP1Q14766 1721 aa12.28□□□□□ -0.44
CNOT9-202ENST00000295701 TMEM88BA6NKF7 163 aa12.27□□□□□ -0.45
CNOT9-202ENST00000295701 KIF6Q6ZMV9 814 aa12.27□□□□□ -0.45
CNOT9-202ENST00000295701 SPNS2Q8IVW8 549 aa12.27□□□□□ -0.45
CNOT9-202ENST00000295701 ZNF34Q8IZ26 560 aa12.27□□□□□ -0.45
CNOT9-202ENST00000295701 CNTROBQ8N137 903 aa12.27□□□□□ -0.45
CNOT9-202ENST00000295701 PNISRQ8TF01 805 aaKnown RBP12.27□□□□□ -0.45
CNOT9-202ENST00000295701 TAF1P21675 1872 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 NTSR2O95665 410 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 NEFMP07197 916 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 EIF2S2P20042 333 aaKnown RBP12.26□□□□□ -0.45
CNOT9-202ENST00000295701 HOXA10P31260 410 aaPredicted RBP12.26□□□□□ -0.45
CNOT9-202ENST00000295701 PDIA6Q15084 440 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 PROSER3Q2NL68 480 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 GIGYF2Q6Y7W6 1299 aaKnown RBP12.26□□□□□ -0.45
CNOT9-202ENST00000295701 LRP10Q7Z4F1 713 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 GPC2Q8N158 579 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 RPGRQ92834 1020 aaKnown RBP12.26□□□□□ -0.45
CNOT9-202ENST00000295701 PSMD1Q99460 953 aa12.26□□□□□ -0.45
CNOT9-202ENST00000295701 EPS15P42566 896 aa12.25□□□□□ -0.45
CNOT9-202ENST00000295701 LARGE2Q8N3Y3 721 aa12.25□□□□□ -0.45
CNOT9-202ENST00000295701 JDP2Q8WYK2 163 aa12.25□□□□□ -0.45
CNOT9-202ENST00000295701 NECTIN2Q92692 538 aa12.25□□□□□ -0.45
CNOT9-202ENST00000295701 KHSRPQ92945 711 aaKnown RBP eCLIP12.25□□□□□ -0.453e-14■■■□□ 17.9
CNOT9-202ENST00000295701 ZNF428Q96B54 188 aa12.25□□□□□ -0.45
CNOT9-202ENST00000295701 SCNN1DP51172 638 aa12.24□□□□□ -0.45
CNOT9-202ENST00000295701 EIF6P56537 245 aaKnown RBP12.24□□□□□ -0.45
CNOT9-202ENST00000295701 PNMA8AQ86V59 439 aaPredicted RBP12.24□□□□□ -0.45
CNOT9-202ENST00000295701 RBM17Q96I25 401 aaKnown RBP12.24□□□□□ -0.45
CNOT9-202ENST00000295701 CRAMP1Q96RY5 1269 aa12.24□□□□□ -0.45
CNOT9-202ENST00000295701 TSPYL4Q9UJ04 414 aa12.24□□□□□ -0.45
CNOT9-202ENST00000295701 LAMB2P55268 1798 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 PPEF1O14829 653 aaPredicted RBP12.23□□□□□ -0.45
CNOT9-202ENST00000295701 SLC34A2O95436 690 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 RIPK4P57078 832 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 DEFB115Q30KQ5 88 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 CC2D2BQ6DHV5 1058 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 WBP1LQ9NX94 342 aa12.23□□□□□ -0.45
CNOT9-202ENST00000295701 TRPM7Q96QT4 1865 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms