RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 MRC2Q9UBG0 1479 aa18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 SLC5A1P13866 664 aa18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 MRPS27Q92552 414 aaKnown RBP18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 ANKRD18BA2A2Z9 1011 aa18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 PTGS1P23219 599 aa18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 ZNF444Q8N0Y2 327 aaPredicted RBP18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 ZBTB9Q96C00 473 aa18.88■□□□□ 0.61
SH3RF1-201ENST00000284637 MACROD2A1Z1Q3 448 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 RIOK3O14730 519 aaKnown RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 LDHAL6AQ6ZMR3 332 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 MAATS1Q7Z4T9 603 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 FOXO3O43524 673 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 UBA7P41226 1012 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 TMEM266Q2M3C6 531 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 DZIP1Q86YF9 867 aaKnown RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 RNF123Q5XPI4 1314 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 NAA15Q9BXJ9 866 aaKnown RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 MYO1BO43795 1136 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 MARCKSP29966 332 aaPredicted RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 CETN2P41208 172 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 AFMP43652 599 aa18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 LMOD1P29536 600 aaPredicted RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 CTNNBL1Q8WYA6 563 aaPredicted RBP18.87■□□□□ 0.61
SH3RF1-201ENST00000284637 KANK3Q6NY19 840 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 TTC21BQ7Z4L5 1316 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 CCDC40Q4G0X9 1142 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 ERO1AQ96HE7 468 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 PPP1R9BQ96SB3 815 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 TCP11L1Q9NUJ3 509 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 SYT1P21579 422 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 NOP2P46087 812 aaKnown RBP18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 PRPF4BQ13523 1007 aaKnown RBP18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 TCERG1LQ5VWI1 586 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 Q6ZUG5 572 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 ANKRD36BQ8N2N9 1353 aa18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 SPTY2D1Q68D10 685 aaPredicted RBP18.86■□□□□ 0.61
SH3RF1-201ENST00000284637 FAM135AQ9P2D6 1515 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 CCDC175P0C221 793 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 AK2P54819 239 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 ATP8B2P98198 1209 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 TSPYL6Q8N831 410 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 IQGAP2Q13576 1575 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 MFSD6Q6ZSS7 791 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 KCNG4Q8TDN1 519 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 CHPF2Q9P2E5 772 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 PAXIP1Q6ZW49 1069 aaPredicted RBP18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 PHF8Q9UPP1 1060 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 AKR1B10O60218 316 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 KRBA2Q6ZNG9 492 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 DCTPP1Q9H773 170 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 ZBTB40Q9NUA8 1239 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 RALGAPBQ86X10 1494 aa18.85■□□□□ 0.61
SH3RF1-201ENST00000284637 TRIM47Q96LD4 638 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 ALG1Q9BT22 464 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 PTPRKQ15262 1439 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 SMC1AQ14683 1233 aaKnown RBP18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 POTEJP0CG39 1038 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 TRIM21P19474 475 aaKnown RBP18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 CTAGE15A4D2H0 777 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 CTAGE8P0CG41 777 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 CCDC96Q2M329 555 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 CTAGE6Q86UF2 777 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 PLEKHM2Q8IWE5 1019 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 CTAGE4Q8IX94 777 aa18.84■□□□□ 0.61
SH3RF1-201ENST00000284637 GTF3C6Q969F1 213 aa18.83■□□□□ 0.61
SH3RF1-201ENST00000284637 EBAG9O00559 213 aa18.83■□□□□ 0.61
SH3RF1-201ENST00000284637 UBE4AQ14139 1066 aa18.83■□□□□ 0.61
SH3RF1-201ENST00000284637 VAT1LQ9HCJ6 419 aa18.83■□□□□ 0.61
SH3RF1-201ENST00000284637 AMOTL2Q9Y2J4 779 aa18.83■□□□□ 0.61
SH3RF1-201ENST00000284637 RRAGBQ5VZM2 374 aa18.83■□□□□ 0.6
SH3RF1-201ENST00000284637 CALML4Q96GE6 196 aa18.83■□□□□ 0.6
SH3RF1-201ENST00000284637 CWC25Q9NXE8 425 aaPredicted RBP18.83■□□□□ 0.6
SH3RF1-201ENST00000284637 CRACR2BQ8N4Y2 399 aaPredicted RBP18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 ASXL1Q8IXJ9 1541 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 GCOM1H8Y6P7 765 aaPredicted RBP18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 MYZAPP0CAP1 466 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 DRC1Q96MC2 740 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 TTF1Q15361 905 aaPredicted RBP18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 SLC4A8Q2Y0W8 1093 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 CEP85Q6P2H3 762 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 PA2G4Q9UQ80 394 aaKnown RBP18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 DNMBPQ6XZF7 1577 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 BCL2L12Q9HB09 334 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 ANKIB1Q9P2G1 1089 aa18.82■□□□□ 0.6
SH3RF1-201ENST00000284637 ATP2C2O75185 946 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 AMPD3Q01432 767 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 NMIQ13287 307 aaPredicted RBP18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 ZBTB43O43298 467 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 VAMP4O75379 141 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 KRT24Q2M2I5 525 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 ABCA10Q8WWZ4 1543 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 USP26Q9BXU7 913 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 GBP6Q6ZN66 633 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 ANKRD13DQ6ZTN6 518 aa18.81■□□□□ 0.6
SH3RF1-201ENST00000284637 ZNF652Q9Y2D9 606 aa18.8■□□□□ 0.6
SH3RF1-201ENST00000284637 FSD2A1L4K1 749 aa18.8■□□□□ 0.6
SH3RF1-201ENST00000284637 TSPY2A6NKD2 308 aa18.8■□□□□ 0.6
SH3RF1-201ENST00000284637 SLTMQ9NWH9 1034 aaKnown RBP eCLIP18.8■□□□□ 0.6
SH3RF1-201ENST00000284637 MCMDC2Q4G0Z9 681 aa18.8■□□□□ 0.6
SH3RF1-201ENST00000284637 FAM114A1Q8IWE2 563 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms