RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 TSG101Q99816 390 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 PEX19P40855 299 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 ATP11AP98196 1134 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 BLOC1S2Q6QNY1 142 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 UIMC1Q96RL1 719 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 ZBTB24O43167 697 aaPredicted RBP12.65□□□□□ -0.38
MSH6-201ENST00000234420 FCHSD2O94868 740 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 DNAI1Q9UI46 699 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 SETDB2Q96T68 719 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 RABGAP1Q9Y3P9 1069 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 SRGAP3O43295 1099 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 MAP7D1Q3KQU3 841 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 CTAGE6Q86UF2 777 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 CCDC170Q8IYT3 715 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 STMN2Q93045 179 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 CLSTN2Q9H4D0 955 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 PPP6R1Q9UPN7 881 aa12.65□□□□□ -0.38
MSH6-201ENST00000234420 HLA-DOAP06340 250 aa12.65□□□□□ -0.39
MSH6-201ENST00000234420 BOLA2Q9H3K6 86 aa12.65□□□□□ -0.39
MSH6-201ENST00000234420 SMIM23A6NLE4 172 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 NDC80O14777 642 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 IFIT1P09914 478 aaKnown RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 SLC5A1P13866 664 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 BIN1O00499 593 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 SSFA2P28290 1259 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 ARID5AQ03989 594 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 IQCGQ9H095 443 aaKnown RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 CASQ2O14958 399 aaPredicted RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 FAM47CQ5HY64 1035 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 SETDB1Q15047 1291 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 TSPYL2Q9H2G4 693 aaPredicted RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 GDPD2Q9HCC8 539 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 OGFRQ9NZT2 677 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 MKRN3Q13064 507 aaKnown RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 IFIT5Q13325 482 aaKnown RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 ACRBPQ8NEB7 543 aa12.64□□□□□ -0.39
MSH6-201ENST00000234420 MYCBPQ99417 103 aaPredicted RBP12.64□□□□□ -0.39
MSH6-201ENST00000234420 TWISTNBQ3B726 338 aaPredicted RBP12.63□□□□□ -0.39
MSH6-201ENST00000234420 LRRC43Q8N309 656 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 FAM200AQ8TCP9 573 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 ATP5J2-PTCD1G3V325 749 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 WHAMMP3Q1A5X7 153 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 KIAA0753Q2KHM9 967 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 LCA5Q86VQ0 697 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 RNF34Q969K3 372 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 CDCA7Q9BWT1 371 aaPredicted RBP12.63□□□□□ -0.39
MSH6-201ENST00000234420 BAG4O95429 457 aaKnown RBP12.63□□□□□ -0.39
MSH6-201ENST00000234420 CACNA2D3Q8IZS8 1091 aa12.63□□□□□ -0.39
MSH6-201ENST00000234420 TNPO1Q92973 898 aaKnown RBP12.63□□□□□ -0.39
MSH6-201ENST00000234420 CTAGE15A4D2H0 777 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 CTAGE8P0CG41 777 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 FMNL3Q8IVF7 1028 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 CTAGE4Q8IX94 777 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 TSPY2A6NKD2 308 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 PRR16Q569H4 304 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 ARHGAP27Q6ZUM4 889 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 SLF2Q8IX21 1173 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 AKNAQ7Z591 1439 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 MICAL1Q8TDZ2 1067 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 TOM1O60784 492 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 CASTP20810 708 aaKnown RBP12.62□□□□□ -0.39
MSH6-201ENST00000234420 ZBTB33Q86T24 672 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 AFAP1Q8N556 730 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 CCDC63Q8NA47 563 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 SPATA17Q96L03 361 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 RABEP2Q9H5N1 569 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 PPP2R5DQ14738 602 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 RAB3GAP1Q15042 981 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 CCDC129Q6ZRS4 1044 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 GCC1Q96CN9 775 aa12.62□□□□□ -0.39
MSH6-201ENST00000234420 SEC62Q99442 399 aaKnown RBP12.62□□□□□ -0.39
MSH6-201ENST00000234420 TPX2Q9ULW0 747 aaKnown RBP12.62□□□□□ -0.39
MSH6-201ENST00000234420 RASA3Q14644 834 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 PANK2Q9BZ23 570 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 C4orf50Q6ZRC1 276 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 STK24Q9Y6E0 443 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 CCT2P78371 535 aaKnown RBP12.61□□□□□ -0.39
MSH6-201ENST00000234420 CEP85LQ5SZL2 805 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 RNF169Q8NCN4 708 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 VCX3BQ9H321 246 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 INPP5BP32019 993 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 SAMD15Q9P1V8 674 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 MKRN1Q9UHC7 482 aaKnown RBP12.61□□□□□ -0.39
MSH6-201ENST00000234420 SLU7O95391 586 aaKnown RBP12.61□□□□□ -0.39
MSH6-201ENST00000234420 CCDC65Q8IXS2 484 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 STX8Q9UNK0 236 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 PPFIA1Q13136 1202 aa12.61□□□□□ -0.39
MSH6-201ENST00000234420 ZSCAN31Q96LW9 406 aaPredicted RBP12.61□□□□□ -0.39
MSH6-201ENST00000234420 FNDC3AQ9Y2H6 1198 aaKnown RBP12.61□□□□□ -0.39
MSH6-201ENST00000234420 TMEM266Q2M3C6 531 aa12.6□□□□□ -0.39
MSH6-201ENST00000234420 GSDMBQ8TAX9 411 aa12.6□□□□□ -0.39
MSH6-201ENST00000234420 IFRD2Q12894 506 aaPredicted RBP12.6□□□□□ -0.39
MSH6-201ENST00000234420 CDKL5O76039 1030 aa12.6□□□□□ -0.39
MSH6-201ENST00000234420 SREK1Q8WXA9 508 aaKnown RBP12.6□□□□□ -0.39
MSH6-201ENST00000234420 U2AF2P26368 475 aaKnown RBP eCLIP12.6□□□□□ -0.392e-9■■■■■ 28.4
MSH6-201ENST00000234420 FAM76AQ8TAV0 307 aa12.6□□□□□ -0.39
MSH6-201ENST00000234420 PICK1Q9NRD5 415 aa12.6□□□□□ -0.39
MSH6-201ENST00000234420 PFDN1O60925 122 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 MCM10Q7L590 875 aa12.59□□□□□ -0.39
MSH6-201ENST00000234420 TRIM6Q9C030 488 aaPredicted RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms