RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 CCDC73Q6ZRK6 1079 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 IFNKQ9P0W0 207 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 IL16Q14005 1332 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 KINO60870 393 aaKnown RBP17.06■□□□□ 0.32
PTPRA-201ENST00000216877 HSP90AB3PQ58FF7 597 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 CCDC30Q5VVM6 783 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 EXOC4Q96A65 974 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 PLEKHF1Q96S99 279 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 SCAND2PQ9GZW5 306 aaPredicted RBP17.06■□□□□ 0.32
PTPRA-201ENST00000216877 CLSTN2Q9H4D0 955 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 RGS12O14924 1447 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 SETQ01105 290 aaPredicted RBP17.06■□□□□ 0.32
PTPRA-201ENST00000216877 E4F1Q66K89 784 aaPredicted RBP17.06■□□□□ 0.32
PTPRA-201ENST00000216877 GIMAP7Q8NHV1 300 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 UTP14AQ9BVJ6 771 aaKnown RBP17.06■□□□□ 0.32
PTPRA-201ENST00000216877 SNX14Q9Y5W7 946 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 QRICH2Q9H0J4 1663 aa17.06■□□□□ 0.32
PTPRA-201ENST00000216877 ERBB3P21860 1342 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 ETF1P62495 437 aaKnown RBP17.05■□□□□ 0.32
PTPRA-201ENST00000216877 GOLGA8FQ08AF8 430 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 GOLGA8DPQ0D2H9 430 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 MCTP2Q6DN12 878 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 FAN1Q9Y2M0 1017 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 GSDMDP57764 484 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 CEP57L1Q8IYX8 460 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 IL25Q9H293 177 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 PUF60Q9UHX1 559 aaKnown RBP17.05■□□□□ 0.32
PTPRA-201ENST00000216877 UBR1Q8IWV7 1749 aa17.05■□□□□ 0.32
PTPRA-201ENST00000216877 KNDC1Q76NI1 1749 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 ECM2O94769 699 aaPredicted RBP17.04■□□□□ 0.32
PTPRA-201ENST00000216877 TPM1P09493 284 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 OS9Q13438 667 aaPredicted RBP17.04■□□□□ 0.32
PTPRA-201ENST00000216877 REXO1L1PQ8IX06 675 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 CYP46A1Q9Y6A2 500 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 USP32Q8NFA0 1604 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 GOLIM4O00461 696 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 ZRANB2O95218 330 aaKnown RBP eCLIP17.04■□□□□ 0.32
PTPRA-201ENST00000216877 ZNF428Q96B54 188 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 PARD6BQ9BYG5 372 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 H3BQF6 201 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 SLC4A2P04920 1241 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 RAI14Q9P0K7 980 aa17.04■□□□□ 0.32
PTPRA-201ENST00000216877 ABCC4O15439 1325 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 A0A0G2JS52 829 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 STX1AQ16623 288 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 ELP1O95163 1332 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 LONRF2Q1L5Z9 754 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 HSP90AA4PQ58FG1 418 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 JAKMIP3Q5VZ66 844 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 LEO1Q8WVC0 666 aaPredicted RBP17.03■□□□□ 0.32
PTPRA-201ENST00000216877 NPHP3Q7Z494 1330 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 PPP2R3AQ06190 1150 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 RPAINQ86UA6 219 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 CENPHQ9H3R5 247 aa17.03■□□□□ 0.32
PTPRA-201ENST00000216877 N4BP1O75113 896 aaKnown RBP17.02■□□□□ 0.32
PTPRA-201ENST00000216877 MRFAP1L1Q96HT8 127 aa17.02■□□□□ 0.32
PTPRA-201ENST00000216877 EVC2Q86UK5 1308 aa17.02■□□□□ 0.32
PTPRA-201ENST00000216877 CFAP65Q6ZU64 1925 aaKnown RBP17.02■□□□□ 0.31
PTPRA-201ENST00000216877 LMOD1P29536 600 aaPredicted RBP17.02■□□□□ 0.31
PTPRA-201ENST00000216877 MMS22LQ6ZRQ5 1243 aa17.02■□□□□ 0.31
PTPRA-201ENST00000216877 IFIT2P09913 472 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 XPO4Q9C0E2 1151 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 EIF3JO75822 258 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 BICC1Q9H694 974 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 RHOXF2BP0C7M4 288 aa17.01■□□□□ 0.31
PTPRA-201ENST00000216877 HSPA4P34932 840 aa17.01■□□□□ 0.31
PTPRA-201ENST00000216877 LRRFIP1Q32MZ4 808 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 LARP1Q6PKG0 1096 aaKnown RBP17.01■□□□□ 0.31
PTPRA-201ENST00000216877 RHOXF2Q9BQY4 288 aa17.01■□□□□ 0.31
PTPRA-201ENST00000216877 ATG3Q9NT62 314 aa17.01■□□□□ 0.31
PTPRA-201ENST00000216877 ZKSCAN1P17029 563 aaPredicted RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 ME1P48163 572 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 CCDC158Q5M9N0 1113 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 CCAR1Q8IX12 1150 aaKnown RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 NAT10Q9H0A0 1025 aaKnown RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 L2HGDHQ9H9P8 463 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 ANO10Q9NW15 660 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 MIS18AQ9NYP9 233 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 RTL1A6NKG5 1358 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 EFCAB8A8MWE9 144 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 PDCP20941 246 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 CEBPAP49715 358 aaPredicted RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 KARSQ15046 597 aaKnown RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 ERLIN2O94905 339 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 RDXP35241 583 aaKnown RBP17■□□□□ 0.31
PTPRA-201ENST00000216877 SIL1Q9H173 461 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 SLC24A3Q9HC58 644 aa17■□□□□ 0.31
PTPRA-201ENST00000216877 TADA3O75528 432 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 SERPINC1P01008 464 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 ME3Q16798 604 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 LRCH2Q5VUJ6 765 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 JPH2Q9BR39 696 aaPredicted RBP16.99■□□□□ 0.31
PTPRA-201ENST00000216877 SUGCTQ9HAC7 445 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 SRGAP3O43295 1099 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 RAB11FIP3O75154 756 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 PLEKHG2Q9H7P9 1386 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 GNAI3P08754 354 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 SF3A1Q15459 793 aaKnown RBP16.99■□□□□ 0.31
PTPRA-201ENST00000216877 NFE2L2Q16236 605 aa16.99■□□□□ 0.31
PTPRA-201ENST00000216877 ADCK5Q3MIX3 580 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms