RNA–Protein interactions for RNA: ENST00000035307.6

CHPF2-201, Transcript of chondroitin polymerizing factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHPF2, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHPF2-201ENST00000035307 ERVV-2B6SEH9 535 aa14.29□□□□□ -0.12
CHPF2-201ENST00000035307 UBR1Q8IWV7 1749 aa14.29□□□□□ -0.12
CHPF2-201ENST00000035307 SRP68Q9UHB9 627 aaKnown RBP14.29□□□□□ -0.12
CHPF2-201ENST00000035307 MINDY4BA8MYZ0 360 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 NBPF26B4DH59 902 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 C6orf229H3BNL8 230 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 IGKV5-2P06315 115 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 ITGA6P23229 1130 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 NBPF14Q5TI25 921 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 NBPF10Q6P3W6 841 aaKnown RBP14.28□□□□□ -0.12
CHPF2-201ENST00000035307 NBPF15Q8N660 670 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 MYOM1P52179 1685 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 CKAP2LQ8IYA6 745 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 ESYT1Q9BSJ8 1104 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 ATG3Q9NT62 314 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 RTCBQ9Y3I0 505 aaKnown RBP14.28□□□□□ -0.12
CHPF2-201ENST00000035307 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.28□□□□□ -0.12
CHPF2-201ENST00000035307 ATP2B3Q16720 1220 aa14.28□□□□□ -0.12
CHPF2-201ENST00000035307 CCAR2Q8N163 923 aaKnown RBP14.28□□□□□ -0.12
CHPF2-201ENST00000035307 CD2BP2O95400 341 aaKnown RBP14.27□□□□□ -0.12
CHPF2-201ENST00000035307 CPLX2Q6PUV4 134 aaKnown RBP14.27□□□□□ -0.12
CHPF2-201ENST00000035307 SYNE3Q6ZMZ3 975 aa14.27□□□□□ -0.12
CHPF2-201ENST00000035307 ZNF622Q969S3 477 aaKnown RBP eCLIP14.27□□□□□ -0.122e-7■□□□□ 10
CHPF2-201ENST00000035307 ARHGAP23Q9P227 1491 aa14.27□□□□□ -0.12
CHPF2-201ENST00000035307 F8W031 263 aaPredicted RBP14.27□□□□□ -0.12
CHPF2-201ENST00000035307 CRKLP46109 303 aaKnown RBP14.27□□□□□ -0.12
CHPF2-201ENST00000035307 AKAP17AQ02040 695 aaKnown RBP14.27□□□□□ -0.12
CHPF2-201ENST00000035307 CCDC87Q9NVE4 849 aa14.27□□□□□ -0.12
CHPF2-201ENST00000035307 ME1P48163 572 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 PKP1Q13835 747 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 NMIQ13287 307 aaPredicted RBP14.26□□□□□ -0.13
CHPF2-201ENST00000035307 TRIM29Q14134 588 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 PI16Q6UXB8 463 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 SEC62Q99442 399 aaKnown RBP14.26□□□□□ -0.13
CHPF2-201ENST00000035307 USP25Q9UHP3 1055 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 A0A1B0GUL7 405 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 CCDC144CPQ8IYA2 1237 aa14.26□□□□□ -0.13
CHPF2-201ENST00000035307 UTP14AQ9BVJ6 771 aaKnown RBP14.26□□□□□ -0.13
CHPF2-201ENST00000035307 MST1RQ04912 1400 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 CDK11BP21127 795 aaKnown RBP14.25□□□□□ -0.13
CHPF2-201ENST00000035307 MIGA1Q8NAN2 632 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 NSFL1CQ9UNZ2 370 aaKnown RBP14.25□□□□□ -0.13
CHPF2-201ENST00000035307 CRB1P82279 1406 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 SEC31BQ9NQW1 1179 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 KRT85P78386 507 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 CCDC173Q0VFZ6 552 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 USPL1Q5W0Q7 1092 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 USP26Q9BXU7 913 aa14.25□□□□□ -0.13
CHPF2-201ENST00000035307 DHX16O60231 1041 aaKnown RBP14.24□□□□□ -0.13
CHPF2-201ENST00000035307 HOXB7P09629 217 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 ATP2B2Q01814 1243 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 SEPT12Q8IYM1 358 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 SPATA32Q96LK8 384 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 ZNF830Q96NB3 372 aaPredicted RBP14.24□□□□□ -0.13
CHPF2-201ENST00000035307 GREM2Q9H772 168 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 SLIT1O75093 1534 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 APBA3O96018 575 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 TDO2P48775 406 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 RBM5P52756 815 aaKnown RBP eCLIP14.24□□□□□ -0.13
CHPF2-201ENST00000035307 TCIRG1Q13488 830 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 CHGBP05060 677 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 AIDAQ96BJ3 306 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 AFF2P51816 1311 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 CHMLP26374 656 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 GJB2P29033 226 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 FAM173BQ6P4H8 233 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 PTF1AQ7RTS3 328 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 TNMDQ9H2S6 317 aa14.24□□□□□ -0.13
CHPF2-201ENST00000035307 RIMBP2O15034 1052 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 MED14O60244 1454 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 RPGRQ92834 1020 aaKnown RBP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 LIMCH1Q9UPQ0 1083 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 CNPY2Q9Y2B0 182 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 SOS2Q07890 1332 aaPredicted RBP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 PDCP20941 246 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 TPM4P67936 248 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 LRRFIP1Q32MZ4 808 aaKnown RBP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 MARCH10Q8NA82 808 aaPredicted RBP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 NUP133Q8WUM0 1156 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 STK38Q15208 465 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 GIMAP6Q6P9H5 292 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 FAM196AQ6ZSG2 479 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 SMARCC1Q92922 1105 aaPredicted RBP14.23□□□□□ -0.13
CHPF2-201ENST00000035307 NLRP3Q96P20 1036 aa14.23□□□□□ -0.13
CHPF2-201ENST00000035307 KINO60870 393 aaKnown RBP14.22□□□□□ -0.13
CHPF2-201ENST00000035307 ADORA1P30542 326 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 FILIP1Q7Z7B0 1213 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 SSH3Q8TE77 659 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 KDRP35968 1356 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 SH3TC1Q8TE82 1336 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 HIP1O00291 1037 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 ZSCAN23Q3MJ62 389 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 TNNI3KQ59H18 835 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 SLC9C2Q5TAH2 1124 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 EVI5LQ96CN4 794 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 FPGT-TNNI3KV9GXZ4 949 aa14.22□□□□□ -0.13
CHPF2-201ENST00000035307 TRAPPC3LQ5T215 181 aa14.21□□□□□ -0.13
CHPF2-201ENST00000035307 CCDC191Q8NCU4 936 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms