RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IGSF3O75054 1194 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 TTC41PQ6P2S7 1318 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 PTPN12Q05209 780 aaKnown RBP12.76□□□□□ -0.37
USP28-201ENST00000003302 RIC3Q7Z5B4 369 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 OTUD7BQ6GQQ9 843 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 ZNF790Q6PG37 636 aa12.76□□□□□ -0.37
USP28-201ENST00000003302 SYTL4Q96C24 671 aaPredicted RBP12.76□□□□□ -0.37
USP28-201ENST00000003302 KIAA2012Q0VF49 1180 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 CCDC144BQ3MJ40 725 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 TTLL5Q6EMB2 1281 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 CCDC144CPQ8IYA2 1237 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 PIBF1Q8WXW3 757 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 RFX5P48382 616 aaPredicted RBP12.75□□□□□ -0.37
USP28-201ENST00000003302 GCKRQ14397 625 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 KCNB2Q92953 911 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 EVI5LQ96CN4 794 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 MED23Q9ULK4 1368 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 C1orf141Q5JVX7 400 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 LINS1Q8NG48 757 aa12.75□□□□□ -0.37
USP28-201ENST00000003302 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.75□□□□□ -0.37
USP28-201ENST00000003302 CCT2P78371 535 aaKnown RBP12.74□□□□□ -0.37
USP28-201ENST00000003302 PTPN21Q16825 1174 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 CTDNEP1O95476 244 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 ANO6Q4KMQ2 910 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 DNAJC25Q9H1X3 360 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 ATP2B3Q16720 1220 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 SCRN1Q12765 414 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 PI16Q6UXB8 463 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 BRF1Q92994 677 aa12.74□□□□□ -0.37
USP28-201ENST00000003302 CYP27B1O15528 508 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 RPS6KB1P23443 525 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 G3BP1Q13283 466 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP28-201ENST00000003302 NLRP2Q9NX02 1062 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 LMO7Q8WWI1 1683 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 TYRO3Q06418 890 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 Q6ZUG5 572 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 SYNE4Q8N205 404 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 CBX8Q9HC52 389 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 DDX21Q9NR30 783 aaKnown RBP eCLIP12.73□□□□□ -0.37
USP28-201ENST00000003302 SPDYE4A6NLX3 237 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 USP27XA6NNY8 438 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 PLEKHO1Q53GL0 409 aaPredicted RBP12.73□□□□□ -0.37
USP28-201ENST00000003302 LEO1Q8WVC0 666 aaPredicted RBP12.73□□□□□ -0.37
USP28-201ENST00000003302 GOLPH3LQ9H4A5 285 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 MEGF6O75095 1541 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 BLOC1S2Q6QNY1 142 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 SASS6Q6UVJ0 657 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 TTLL7Q6ZT98 887 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 C11orf57Q6ZUT1 292 aaPredicted RBP12.73□□□□□ -0.37
USP28-201ENST00000003302 KIAA1524Q8TCG1 905 aa12.73□□□□□ -0.37
USP28-201ENST00000003302 LRRC24Q50LG9 513 aa12.72□□□□□ -0.37
USP28-201ENST00000003302 PUS3Q9BZE2 481 aaKnown RBP12.72□□□□□ -0.37
USP28-201ENST00000003302 ERBB3P21860 1342 aa12.72□□□□□ -0.37
USP28-201ENST00000003302 CCDC186Q7Z3E2 898 aa12.72□□□□□ -0.37
USP28-201ENST00000003302 APOBRQ0VD83 1088 aa12.72□□□□□ -0.37
USP28-201ENST00000003302 ILDR1Q86SU0 546 aaPredicted RBP12.72□□□□□ -0.37
USP28-201ENST00000003302 UBE2Q2LH0YL09 131 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 SYAP1Q96A49 352 aaPredicted RBP12.71□□□□□ -0.37
USP28-201ENST00000003302 PKNOX2Q96KN3 472 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 SNRKQ9NRH2 765 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 ANKARQ7Z5J8 1434 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 PALLDQ8WX93 1383 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 RIOK3O14730 519 aaKnown RBP12.71□□□□□ -0.37
USP28-201ENST00000003302 ADD1P35611 737 aaKnown RBP12.71□□□□□ -0.37
USP28-201ENST00000003302 NBPF26B4DH59 902 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 TNNI3KQ59H18 835 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 NBPF14Q5TI25 921 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 NBPF10Q6P3W6 841 aaKnown RBP12.71□□□□□ -0.37
USP28-201ENST00000003302 NBPF15Q8N660 670 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 BCL2L12Q9HB09 334 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 BABAM1Q9NWV8 329 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 FPGT-TNNI3KV9GXZ4 949 aa12.71□□□□□ -0.37
USP28-201ENST00000003302 C16orf45Q96MC5 204 aaPredicted RBP12.71□□□□□ -0.38
USP28-201ENST00000003302 ZKSCAN1P17029 563 aaPredicted RBP12.7□□□□□ -0.38
USP28-201ENST00000003302 FOXP2O15409 715 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 CBX1P83916 185 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 LMBR1LQ6UX01 489 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 MYRIPQ8NFW9 859 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 GOLIM4O00461 696 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 ALDH1L1O75891 902 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 HAND2P61296 217 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 TM6SF1Q9BZW5 370 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 HOXB7P09629 217 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 SPATA32Q96LK8 384 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 LAMA4Q16363 1823 aa12.7□□□□□ -0.38
USP28-201ENST00000003302 SIPA1L3O60292 1781 aaPredicted RBP12.69□□□□□ -0.38
USP28-201ENST00000003302 UTYO14607 1347 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 NPHP3Q7Z494 1330 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 A0A087WZG4 1122 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 A1BGP04217 495 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 CACTINQ8WUQ7 758 aaKnown RBP12.69□□□□□ -0.38
USP28-201ENST00000003302 PRDM4Q9UKN5 801 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 SCARF1Q14162 830 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 ANKRD13DQ6ZTN6 518 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 NAP1L2Q9ULW6 460 aaPredicted RBP12.69□□□□□ -0.38
USP28-201ENST00000003302 RESTQ13127 1097 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 NEUROD6Q96NK8 337 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 NUP62CLQ9H1M0 184 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 SLC52A2Q9HAB3 445 aa12.69□□□□□ -0.38
USP28-201ENST00000003302 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms