RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF311Q5JNZ3 666 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TMPRSS9Q7Z410 1059 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ARHGEF39Q8N4T4 335 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC37A3Q8NCC5 494 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 OR5AK3PQ8NH89 298 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF461Q8TAF7 563 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ASB5Q8WWX0 329 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SAT2Q96F10 170 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PELI1Q96FA3 418 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF69Q9UC07 566 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ALPK3Q96L96 1907 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TEX13CA0A0J9YWL9 993 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1W2PPV9 198 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC16A8O95907 504 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 S100A8P05109 93 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 FCER2P06734 321 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ASGR1P07306 291 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CHRM4P08173 479 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ABOP16442 354 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MGMTP16455 207 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GDI1P31150 447 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 HSD17B2P37059 387 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RBM34P42696 430 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SPOCK1Q08629 439 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LMAN2Q12907 356 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PIN1Q13526 163 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TRAM2Q15035 370 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CHRNA6Q15825 494 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 DCST1Q5T197 706 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 C9orf64Q5T6V5 341 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LIPKQ5VXJ0 399 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 JMJD6Q6NYC1 403 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TMIGD1Q6UXZ0 262 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 THOC6Q86W42 341 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MNTQ99583 582 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PIGMQ9H3S5 423 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 DOCK6Q96HP0 2047 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TEX13DA0A0J9YY54 714 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 NPIPB13A6NJU9 1138 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 NPIPB4C9JG80 1138 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PLPP1O14494 284 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ADAM10O14672 748 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GMDSO60547 372 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 REM1O75628 298 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 WISP2O76076 250 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SERPINA3P01011 423 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RCC1P18754 421 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 NOVA1P51513 510 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 XKP51811 444 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CRHR2Q13324 411 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SMCO1Q147U7 214 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 C22orf42Q6IC83 251 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ASPHD2Q6ICH7 369 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 Q6ZTK2 550 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF627Q7L945 461 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PAQR7Q86WK9 346 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SIRT6Q8N6T7 355 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CHST4Q8NCG5 386 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 OR5L2Q8NGL0 311 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ABHD4Q8TB40 342 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MYLIPQ8WY64 445 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MIB2Q96AX9 1013 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 C1GALT1C1Q96EU7 318 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLCO5A1Q9H2Y9 848 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SIDT1Q9NXL6 827 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MICAL3Q7RTP6 2002 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 MIA3Q5JRA6 1907 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 UBE2QL1A1L167 161 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 POM121BA6NF01 834 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 C5orf52A6NGY3 159 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC22A31A6NKX4 558 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ZNF729A6NN14 1252 aaPredicted RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 IFITM5A6NNB3 132 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GPR89AB7ZAQ6 455 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 PROS1P07225 676 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GPR89BP0CG08 455 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 DNASE1L1P49184 302 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 NCBP2P52298 156 aaKnown RBP eCLIP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ROM1Q03395 351 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 RAB33AQ14088 237 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 ZCCHC12Q6PEW1 402 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 LRRC75AQ8NAA5 344 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 OR2L3Q8NG85 312 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 OR4A4PQ8NGN8 299 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 REPIN1Q9BWE0 567 aaKnown RBP4.93□□□□□ -1.62
SYNE1-220ENST00000471834 GSDMCQ9BYG8 508 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TTTY10Q9BZA0 68 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CCSER2Q9H7U1 834 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 SLC2A4RGQ9NR83 387 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TREM2Q9NZC2 230 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 CTSFQ9UBX1 484 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 COLEC10Q9Y6Z7 277 aa4.93□□□□□ -1.62
SYNE1-220ENST00000471834 TRAV14DV4A0A0A6YYC5 116 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 A0A1W2PRG6 482 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 UBE2CO00762 179 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 GFRA3O60609 400 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 EPHX1P07099 455 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 BTF3P20290 206 aaKnown RBP4.92□□□□□ -1.62
SYNE1-220ENST00000471834 OR1D2P34982 312 aa4.92□□□□□ -1.62
SYNE1-220ENST00000471834 ID4P47928 161 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms