RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 PTH2RP49190 550 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 PDX1P52945 283 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 H2BFSP57053 126 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TNFRSF17Q02223 184 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF85Q03923 595 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CBFBQ13951 182 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 UBXN2BQ14CS0 331 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RPE65Q16518 533 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 DMKNQ6E0U4 476 aaPredicted RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 Q6ZNB5 142 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR2AK2Q8NG84 335 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 PNPLA2Q96AD5 504 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 PEX11GQ96HA9 241 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CAPNS2Q96L46 248 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ARHGDIGQ99819 225 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 SLITRK2Q9H156 845 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 BIN3Q9NQY0 253 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RANBP2P49792 3224 aaKnown RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TRBV23-1A0A0A0MS06 115 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 HMSDA8MTL9 139 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 GPR31O00270 319 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ATG12O94817 140 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 NDUFB6O95139 128 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 HAAOP46952 286 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 SOX2P48431 317 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 DEFB115Q30KQ5 88 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 KRT77Q7Z794 578 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 MCATQ8IVS2 390 aaKnown RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 RFLNBQ8N5W9 214 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 GRHL3Q8TE85 626 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 LCORQ96JN0 433 aaPredicted RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TIMP4Q99727 224 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CAPN10Q9HC96 672 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TCF7L1Q9HCS4 588 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 COMMD9Q9P000 198 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 A0A1W2PS29 197 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR14I1A6ND48 311 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 EMC8O43402 210 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR2A4O95047 310 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 HPP00738 406 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 IFNGP01579 166 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 SRMP19623 302 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CDK2P24941 298 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 GRPRP30550 384 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 MPIP34949 423 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ADH7P40394 386 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 P2RX1P51575 399 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 LUMP51884 338 aaPredicted RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 SIRPAP78324 504 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 DCAF12L2Q5VW00 463 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF600Q6ZNG1 722 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TMEM151BQ8IW70 566 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ZFP82Q8N141 532 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR6K6Q8NGW6 343 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 DUSP19Q8WTR2 217 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TMEM239Q8WW34 195 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 NSMAFQ92636 917 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 SMIM19Q96E16 107 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 OR2A7Q96R45 310 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 TINAGL1Q9GZM7 467 aaPredicted RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 CCDC86Q9H6F5 360 aaKnown RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 ADGRL4Q9HBW9 690 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 C20orf141Q9NUB4 165 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 USP36Q9P275 1121 aaKnown RBP11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 NDRG3Q9UGV2 375 aa11.87□□□□□ -0.51
SFSWAP-209ENST00000540469 KIAA1671Q9BY89 1806 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 SELENOFO60613 162 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 RPP14O95059 124 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 PAK4O96013 591 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 S100A9P06702 114 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 MAKP20794 623 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 CDK5R1Q15078 307 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 RBMS2Q15434 407 aaKnown RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 C2orf68Q2NKX9 166 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 OR7E24Q6IFN5 339 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 RAB12Q6IQ22 244 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 THSD4Q6ZMP0 1018 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 DOK4Q8TEW6 326 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 JAM3Q9BX67 310 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC25A32Q9H2D1 315 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 CMC2Q9NRP2 79 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ASF1BQ9NVP2 202 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC35A3Q9Y2D2 325 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF780BQ9Y6R6 833 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 OR6C65A6NJZ3 312 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 IFITM5A6NNB3 132 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 J3QRE1 110 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 K7ESM1 405 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ABCD4O14678 606 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 GTF2F2P13984 249 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 CAP1Q01518 475 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 SLC6A19Q695T7 634 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 TMEM25Q86YD3 366 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 DCUN1D3Q8IWE4 304 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 BEST3Q8N1M1 668 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF707Q96C28 371 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF275Q9NSD4 429 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ZNF443Q9Y2A4 671 aaPredicted RBP11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 V9GY05 133 aa11.86□□□□□ -0.51
SFSWAP-209ENST00000540469 ANKRD20A5PA0PJZ0 165 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 156.2 ms