RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ATP6V1C2Q8NEY4 427 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 PHOSPHO1Q8TCT1 267 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF721Q8TF20 911 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 C3orf49Q96BT1 292 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 LRFN5Q96NI6 719 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 ERMAPQ96PL5 475 aaPredicted RBP11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 CCNL2Q96S94 520 aaPredicted RBP11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 ALG8Q9BVK2 526 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC19A3Q9BZV2 496 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 UNC13CQ8NB66 2214 aa11.87□□□□□ -0.51
SPTLC1-201ENST00000262554 TRIOBPQ9H2D6 2365 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 C2orf92A0A1B0GVN3 265 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 TCRBV16S1A1N1A0A5B0 115 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 HTR3EA5X5Y0 456 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 CCDC182A6NF36 153 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ELOA3DA6NLF2 546 aaPredicted RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 GTPBP1O00178 669 aaKnown RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 PRKNO60260 465 aaPredicted RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 SNX4O95219 450 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 IGKV3-11P04433 115 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 PNMTP11086 282 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 SLC2A5P22732 501 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 SDC2P34741 201 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 HNRNPA0Q13151 305 aaKnown RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 GALEQ14376 348 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 NSDHLQ15738 373 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ELOA3BQ3SY89 546 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF362Q5T0B9 420 aaPredicted RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 FNDC7Q5VTL7 733 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 STEAP3Q658P3 488 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 KLBQ86Z14 1044 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 TMEM99Q8N816 258 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ELOA3Q8NG57 546 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 OR10H4Q8NGA5 316 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 OR5M3Q8NGP4 307 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 OR14A16Q8NHC5 309 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 DAZLQ92904 295 aaKnown RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ADIPOR1Q96A54 375 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 CCDC74AQ96AQ1 378 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 IER2Q9BTL4 223 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 TMED9Q9BVK6 235 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF768Q9H5H4 540 aaKnown RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 EXOSC3Q9NQT5 275 aaKnown RBP11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 FGF21Q9NSA1 209 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ASB6Q9NWX5 421 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 KLHL21Q9UJP4 597 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF337Q9Y3M9 751 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 CMAHPQ9Y471 501 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ADAMTS20P59510 1910 aa11.86□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF264O43296 627 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 REM1O75628 298 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GTF2E2P29084 291 aaKnown RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 LCN1P31025 176 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 RPL4P36578 427 aaKnown RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 DHPSP49366 369 aaPredicted RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 CCR4P51679 360 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 POU4F2Q12837 409 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 SKP2Q13309 424 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GPR50Q13585 617 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 SHBQ15464 509 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 CD226Q15762 336 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 TBC1D25Q3MII6 688 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 VWA2Q5GFL6 755 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 C1orf189Q5VU69 101 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 LYSMD4Q5XG99 296 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 HLA-DQA1Q5Y7H0 255 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 CYB561A3Q8NBI2 242 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 FAM98AQ8NCA5 519 aaKnown RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 FAM83FQ8NEG4 500 aaPredicted RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 OR52E2Q8NGJ4 325 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF501Q96CX3 271 aaPredicted RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 WDFY2Q96P53 400 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GAL3ST4Q96RP7 486 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 TBX5Q99593 518 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 NUDT22Q9BRQ3 303 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 SP140LQ9H930 580 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ISG20L2Q9H9L3 353 aaKnown RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 POLE4Q9NR33 117 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 BABAM2Q9NXR7 383 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 HAO2Q9NYQ3 351 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 COPS7AQ9UBW8 275 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 CHRNA9Q9UGM1 479 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ZNF229Q9UJW7 825 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 LRRTM2O43300 516 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 OR7A10O76100 309 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 SBK2P0C263 348 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 CLEC2LP0C7M8 214 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GAAP10253 952 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GALP22466 123 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 IL12BP29460 328 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ACTC1P68032 377 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ACTA1P68133 377 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 PSPHP78330 225 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 KRR1Q13601 381 aaKnown RBP11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 DPY19L2P2Q6ZN68 376 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 POC5Q8NA72 575 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 GALNT6Q8NCL4 622 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 AP3S1Q92572 193 aa11.85□□□□□ -0.51
SPTLC1-201ENST00000262554 ADOQ96SZ5 270 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms