RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MTDHQ86UE4 582 aaKnown RBP17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 OCEL1Q9H607 264 aa17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 ACSS1Q9NUB1 689 aaPredicted RBP17.76■□□□□ 0.43
SQSTM1-215ENST00000514093 MRPL33O75394 65 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 VENTXO95231 258 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 TFPIP10646 304 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 SDC1P18827 310 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 SNRPD2P62316 118 aaKnown RBP17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 CSNK2A1P68400 391 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 BHLHB9Q6PI77 547 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 SLC46A3Q7Z3Q1 461 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 CCDC103Q8IW40 242 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 ARL8AQ96BM9 186 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 BHLHE41Q9C0J9 482 aaPredicted RBP17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 SLC17A5Q9NRA2 495 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 MALT1Q9UDY8 824 aa17.75■□□□□ 0.43
SQSTM1-215ENST00000514093 NPIPB9F8W1W9 429 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 ETV2O00321 342 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 EIF4E2O60573 245 aaKnown RBP17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 TBX19O60806 448 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 GSTA1P08263 222 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 UBL4AP11441 157 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 SESN3P58005 492 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 MERTKQ12866 999 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 PDE7AQ13946 482 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 PDK3Q15120 406 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 SPATA19Q7Z5L4 167 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 RELL1Q8IUW5 271 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 ADAMTS15Q8TE58 950 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 ZNF764Q96H86 408 aaPredicted RBP17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 SERINC1Q9NRX5 453 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 C1orf109Q9NX04 203 aa17.74■□□□□ 0.43
SQSTM1-215ENST00000514093 PDLIM1O00151 329 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 KLF11O14901 512 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 SYT14P1Q58G82 188 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 PDZK1Q5T2W1 519 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 CLEC6AQ6EIG7 209 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 RINLQ6ZS11 566 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 ZNF540Q8NDQ6 660 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 CCT7Q99832 543 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 ACTRT3Q9BYD9 372 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 UPB1Q9UBR1 384 aa17.73■□□□□ 0.43
SQSTM1-215ENST00000514093 STAMBPO95630 424 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 SERPINF1P36955 418 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 TP53BP2Q13625 1128 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 CASP12Q6UXS9 341 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 TIFABQ6ZNK6 161 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 OLIG3Q7RTU3 272 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 OR2T11Q8NH01 316 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 ARL5BQ96KC2 179 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 MYOZ1Q9NP98 299 aaPredicted RBP17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 SLC7A10Q9NS82 523 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 METRNQ9UJH8 293 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 AMDHD2Q9Y303 409 aa17.72■□□□□ 0.43
SQSTM1-215ENST00000514093 SERINC4A6NH21 518 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 GPR171O14626 319 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 RGS9O75916 674 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 CDH2P19022 906 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 PRPH2P23942 346 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 APEX1P27695 318 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 GCAP28676 217 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 CCT3P49368 545 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 SKP2Q13309 424 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 ZSWIM7Q19AV6 140 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 RFTN2Q52LD8 501 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 C8orf74Q6P047 294 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 VHLLQ6RSH7 139 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 LINC01356Q8N9X3 169 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 PIGXQ8TBF5 258 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 ST8SIA1Q92185 356 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 ZHX1-C8orf76Q96EF9 292 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 METTL2AQ96IZ6 378 aaKnown RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 SNX18Q96RF0 628 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 LAT2Q9GZY6 243 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 KCNE5Q9UJ90 142 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 PYCARDQ9ULZ3 195 aa17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 FAF1Q9UNN5 650 aaPredicted RBP17.71■□□□□ 0.43
SQSTM1-215ENST00000514093 A0A087WUV0 522 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 CENPVL1A0A0U1RR11 272 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 EXOC1LA0A1B0GW35 172 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 G3V2L1 256 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 SLC28A1O00337 649 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 LILRA1O75019 489 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 UBTFL6P0CB48 400 aaPredicted RBP17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 UROSP10746 265 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 CHN2P52757 468 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 PRPS1P60891 318 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 RPL38P63173 70 aaKnown RBP17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 GPR68Q15743 365 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 HIKESHIQ53FT3 197 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 TSPO2Q5TGU0 170 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 FRMD7Q6ZUT3 714 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 C17orf78Q8N4C9 275 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 C3orf56Q8N813 242 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 OR7A2PQ8NGA2 310 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 OR5D16Q8NGK9 328 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 FCRL1Q96LA6 429 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 OR11A1Q9GZK7 315 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 CTPS2Q9NRF8 586 aa17.7■□□□□ 0.42
SQSTM1-215ENST00000514093 CA10Q9NS85 328 aa17.7■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms