RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 TOR1AIP2Q8NFQ8 470 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 OR5AK3PQ8NH89 298 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 MIPOL1Q8TD10 442 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 GPR119Q8TDV5 335 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 NUDT8Q8WV74 236 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 TESCQ96BS2 214 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 ARSGQ96EG1 525 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 REXO5Q96IC2 774 aaKnown RBP17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 MRGPRX4Q96LA9 322 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 C20orf27Q9GZN8 174 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 CENPHQ9H3R5 247 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 KCNK9Q9NPC2 374 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 EXD2Q9NVH0 621 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 BEX4Q9NWD9 120 aaPredicted RBP17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 CARD8Q9Y2G2 431 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 KCNE3Q9Y6H6 103 aa17.08■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF195O14628 629 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF264O43296 627 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 LBPP18428 481 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 KLK2P20151 261 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 RNPS1Q15287 305 aaKnown RBP17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 POU4F3Q15319 338 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 ARHGAP11BQ3KRB8 267 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 CBLN3Q6UW01 205 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 BEND4Q6ZU67 534 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 OR5W2Q8NH69 310 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 CPNE4Q96A23 557 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 SORT1Q99523 831 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 NPAS1Q99742 590 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF395Q9H8N7 513 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 GP6Q9HCN6 339 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 KLHL28Q9NXS3 571 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 FLNAP21333 2647 aaKnown RBP17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 ROS1P08922 2347 aa17.07■□□□□ 0.32
CCDC28A-203ENST00000617445 RNF103-CHMP3A0A140T963 221 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 OPN1LWP04000 364 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 FOSL1P15407 271 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 UQCRC2P22695 453 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 FOXF1Q12946 379 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 CBFBQ13951 182 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF141Q15928 474 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 SLC25A53Q5H9E4 307 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 ATAD3BQ5T9A4 648 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 AP1ARQ63HQ0 302 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 CLECL1Q8IZS7 167 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 PIAS4Q8N2W9 510 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 OR5D16Q8NGK9 328 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 OR4A15Q8NGL6 344 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 FBXO27Q8NI29 283 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 SLC35G5Q96KT7 338 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 PPP1R36Q96LQ0 422 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 OR10A4Q9H209 315 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 TMEM185BQ9H7F4 350 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 MEAF6Q9HAF1 191 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 POLE3Q9NRF9 147 aa17.06■□□□□ 0.32
CCDC28A-203ENST00000617445 NPIPA5A0A0B4J1W7 369 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 SERINC4A6NH21 518 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 DEFB108AA8MXU0 73 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 NPIPA7E9PJI5 369 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 ETV2O00321 342 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 SCN2BO60939 215 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 NPIPA8P0DM63 369 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 UBL4AP11441 157 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 PRKCAP17252 672 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 CD53P19397 219 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 BGNP21810 368 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 CCKARP32238 428 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 MPP2Q14168 576 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 HHATQ5VTY9 493 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 HEPHL1Q6MZM0 1159 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 OGFOD2Q6N063 350 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 C16orf62Q7Z3J2 963 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF614Q8N883 585 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 KLHDC3Q9BQ90 382 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 TACO1Q9BSH4 297 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 NUF2Q9BZD4 464 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 KLHL4Q9C0H6 718 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF350Q9GZX5 532 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 LAT2Q9GZY6 243 aa17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 C6orf203Q9P0P8 240 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-203ENST00000617445 ZFHX3Q15911 3703 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 A0A1W2PPR1 153 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 ANKRD28O15084 1053 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 OIP5O43482 229 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 EFNA2O43921 213 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 DNAJA2O60884 412 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 NTN1O95631 604 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 SFTPDP35247 375 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 RPS26P62854 115 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 ADAM8P78325 824 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 TXNL4AP83876 142 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 LRRC74AQ0VAA2 488 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 SELENBP1Q13228 472 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 CASP8Q14790 479 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 GPR68Q15743 365 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 ZNF239Q16600 458 aaKnown RBP17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 EXOC3L2Q2M3D2 409 aa17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 TMEM176BQ3YBM2 270 aaPredicted RBP17.04■□□□□ 0.32
CCDC28A-203ENST00000617445 PDZK1Q5T2W1 519 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms