RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 POP7O75817 140 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 OR4Q2P0C623 313 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ACSM4P0C7M7 580 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 HTR1FP30939 366 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 SLC6A9P48067 706 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 PPP1R8Q12972 351 aaKnown RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 ATXN7L2Q5T6C5 722 aaPredicted RBP5□□□□□ -1.61
SYNE1-220ENST00000471834 SMARCD3Q6STE5 483 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 TMPRSS11BQ86T26 416 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 COMTD1Q86VU5 262 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 OR52L1Q8NGH7 329 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 OR6N1Q8NGY5 312 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF681Q96N22 645 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 FZD4Q9ULV1 537 aa5□□□□□ -1.61
SYNE1-220ENST00000471834 F8VVB4 439 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 F8VWA3 439 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SIGLEC6O43699 453 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ABHD16AO95870 558 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ADH1CP00326 375 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HPXP02790 462 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 IFNA4P05014 189 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CXADRP78310 365 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZIC1Q15915 447 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF626Q68DY1 528 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PDE12Q6L8Q7 609 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CNIH2Q6PI25 160 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 LAPTM4BQ86VI4 370 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GPR26Q8NDV2 337 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 DNAAF1Q8NEP3 725 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR52I1Q8NGK6 324 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CEP76Q8TAP6 659 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TEX47Q8TBZ9 253 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TMEM138Q9NPI0 162 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SLC17A5Q9NRA2 495 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ANGPT4Q9Y264 503 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SPEF1Q9Y4P9 236 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HSPB11Q9Y547 144 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CPED1A4D0V7 1026 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF840PA6NDX5 716 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HSPB2A8KAH6 182 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 IQCF5A8MTL0 148 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PRICKLE3O43900 615 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CD74P04233 296 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HOXC4P09017 264 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NR2F1P10589 423 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FOXC1Q12948 553 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 COL19A1Q14993 1142 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HSPB2Q16082 182 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 FAM131AQ6UXB0 335 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SERPINA13PQ6UXR4 307 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 RPTNQ6XPR3 784 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GLDNQ6ZMI3 551 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 LHFPL3Q86UP9 236 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CDH26Q8IXH8 852 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR4D11Q8NGI4 311 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR6T1Q8NGN1 323 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 POF1BQ8WVV4 589 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR5P2Q8WZ92 322 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 HAVCR1Q96D42 359 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 S100A13Q99584 98 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ADAM19Q9H013 955 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ITM2CQ9NQX7 267 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ABCB8Q9NUT2 735 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NDRG3Q9UGV2 375 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 INSL6Q9Y581 213 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 MYO18AQ92614 2054 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TRBV5-5A0A0J9YX44 114 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 A0A1W2PPL8 197 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NPIPB9F8W1W9 429 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OR5F1O95221 314 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ACRP10323 421 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NPPBP16860 134 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 DDCP20711 480 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 GKP32189 559 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ATP5C1P36542 298 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 IDH2P48735 452 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 DLX5P56178 289 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SNRPD1P62314 119 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 LPAL2Q16609 132 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF660Q6AZW8 331 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 DHRS7BQ6IAN0 325 aaPredicted RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 LPCAT3Q6P1A2 487 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SFXN5Q8TD22 340 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SCARB1Q8WTV0 552 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PTX4Q96A99 478 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PANX1Q96RD7 426 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 DMRTA2Q96SC8 542 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 NUDT16L1Q9BRJ7 211 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PTGFRNQ9P2B2 879 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 TRBV23OR9-2A0A075B6M9 112 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ARL5CA6NH57 179 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 PSMB1P20618 241 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SERPINA4P29622 427 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 AQP1P29972 269 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 ZNF239Q16600 458 aaKnown RBP4.99□□□□□ -1.61
SYNE1-220ENST00000471834 KIAA1161Q6NSJ0 714 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 CXCL17Q6UXB2 119 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 OVCH1Q7RTY7 1134 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 SLC36A1Q7Z2H8 476 aa4.99□□□□□ -1.61
SYNE1-220ENST00000471834 P4HA3Q7Z4N8 544 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms