RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 UTP14AQ9BVJ6 771 aaKnown RBP24.92■■□□□ 1.58
CLN3-260ENST00000637578 ARFGEF2Q9Y6D5 1785 aa24.92■■□□□ 1.58
CLN3-260ENST00000637578 HOXA10P31260 410 aaPredicted RBP24.91■■□□□ 1.58
CLN3-260ENST00000637578 NLRP10Q86W26 655 aa24.91■■□□□ 1.58
CLN3-260ENST00000637578 ZNF219Q9P2Y4 722 aaPredicted RBP24.91■■□□□ 1.58
CLN3-260ENST00000637578 TNRC6CQ9HCJ0 1690 aaKnown RBP24.91■■□□□ 1.58
CLN3-260ENST00000637578 RNF123Q5XPI4 1314 aa24.9■■□□□ 1.58
CLN3-260ENST00000637578 CCER2I3L3R5 266 aa24.9■■□□□ 1.58
CLN3-260ENST00000637578 KIF3CO14782 793 aa24.9■■□□□ 1.58
CLN3-260ENST00000637578 ALDH1B1P30837 517 aa24.9■■□□□ 1.58
CLN3-260ENST00000637578 TSPYL6Q8N831 410 aa24.89■■□□□ 1.58
CLN3-260ENST00000637578 TSR2Q969E8 191 aaKnown RBP24.89■■□□□ 1.58
CLN3-260ENST00000637578 CHMP4AQ9BY43 222 aa24.89■■□□□ 1.58
CLN3-260ENST00000637578 FER1L6Q2WGJ9 1857 aa24.89■■□□□ 1.58
CLN3-260ENST00000637578 WDR63Q8IWG1 891 aa24.88■■□□□ 1.57
CLN3-260ENST00000637578 C3orf67Q6ZVT6 689 aa24.87■■□□□ 1.57
CLN3-260ENST00000637578 ISCA1Q9BUE6 129 aa24.87■■□□□ 1.57
CLN3-260ENST00000637578 TAOK3Q9H2K8 898 aa24.87■■□□□ 1.57
CLN3-260ENST00000637578 ANKRD36CQ5JPF3 1778 aa24.86■■□□□ 1.57
CLN3-260ENST00000637578 CCDC30Q5VVM6 783 aa24.86■■□□□ 1.57
CLN3-260ENST00000637578 FAM9BQ8IZU0 186 aa24.86■■□□□ 1.57
CLN3-260ENST00000637578 PHAXQ9H814 394 aaKnown RBP24.85■■□□□ 1.57
CLN3-260ENST00000637578 TRIM28Q13263 835 aaKnown RBP24.84■■□□□ 1.57
CLN3-260ENST00000637578 CCDC93Q567U6 631 aa24.84■■□□□ 1.57
CLN3-260ENST00000637578 RPGRQ92834 1020 aaKnown RBP24.84■■□□□ 1.57
CLN3-260ENST00000637578 NLRP3Q96P20 1036 aa24.84■■□□□ 1.57
CLN3-260ENST00000637578 CRAMP1Q96RY5 1269 aa24.84■■□□□ 1.57
CLN3-260ENST00000637578 NMRK2Q9NPI5 230 aa24.84■■□□□ 1.57
CLN3-260ENST00000637578 TRMT112Q9UI30 125 aaKnown RBP24.84■■□□□ 1.57
CLN3-260ENST00000637578 KDM2BQ8NHM5 1336 aa24.83■■□□□ 1.57
CLN3-260ENST00000637578 SYNE4Q8N205 404 aa24.83■■□□□ 1.57
CLN3-260ENST00000637578 CACNA1SQ13698 1873 aa24.83■■□□□ 1.56
CLN3-260ENST00000637578 SH3TC1Q8TE82 1336 aa24.83■■□□□ 1.56
CLN3-260ENST00000637578 SNED1Q8TER0 1413 aa24.82■■□□□ 1.56
CLN3-260ENST00000637578 OLFM4Q6UX06 510 aa24.82■■□□□ 1.56
CLN3-260ENST00000637578 RTKN2Q8IZC4 609 aa24.82■■□□□ 1.56
CLN3-260ENST00000637578 RBM17Q96I25 401 aaKnown RBP24.82■■□□□ 1.56
CLN3-260ENST00000637578 GLTPD2A6NH11 291 aa24.81■■□□□ 1.56
CLN3-260ENST00000637578 SALL2Q9Y467 1007 aaPredicted RBP24.81■■□□□ 1.56
CLN3-260ENST00000637578 CCDC88AQ3V6T2 1871 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 FKBP4Q02790 459 aaKnown RBP eCLIP24.8■■□□□ 1.56
CLN3-260ENST00000637578 GOLGA2Q08379 1002 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 TWISTNBQ3B726 338 aaPredicted RBP24.8■■□□□ 1.56
CLN3-260ENST00000637578 CC2D2BQ6DHV5 1058 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 FANCIQ9NVI1 1328 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 ATP5J2-PTCD1G3V325 749 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 RIC3Q7Z5B4 369 aa24.8■■□□□ 1.56
CLN3-260ENST00000637578 HCLS1P14317 486 aaPredicted RBP24.79■■□□□ 1.56
CLN3-260ENST00000637578 DICER1Q9UPY3 1922 aaKnown RBP24.78■■□□□ 1.56
CLN3-260ENST00000637578 TOMM70O94826 608 aa24.77■■□□□ 1.56
CLN3-260ENST00000637578 GRIPAP1Q4V328 841 aa24.77■■□□□ 1.56
CLN3-260ENST00000637578 PSMD1Q99460 953 aa24.77■■□□□ 1.56
CLN3-260ENST00000637578 SPINK5Q9NQ38 1064 aaPredicted RBP24.77■■□□□ 1.56
CLN3-260ENST00000637578 TIAM2Q8IVF5 1701 aa24.77■■□□□ 1.56
CLN3-260ENST00000637578 RRAGCQ9HB90 399 aa24.76■■□□□ 1.55
CLN3-260ENST00000637578 DDX58O95786 925 aaKnown RBP24.76■■□□□ 1.55
CLN3-260ENST00000637578 FAM89AQ96GI7 184 aa24.76■■□□□ 1.55
CLN3-260ENST00000637578 METTL22Q9BUU2 404 aaPredicted RBP24.76■■□□□ 1.55
CLN3-260ENST00000637578 STK31Q9BXU1 1019 aa24.76■■□□□ 1.55
CLN3-260ENST00000637578 ABCC4O15439 1325 aa24.75■■□□□ 1.55
CLN3-260ENST00000637578 ZNF521Q96K83 1311 aa24.75■■□□□ 1.55
CLN3-260ENST00000637578 PPEF1O14829 653 aaPredicted RBP24.75■■□□□ 1.55
CLN3-260ENST00000637578 VAMP4O75379 141 aa24.75■■□□□ 1.55
CLN3-260ENST00000637578 DPY19L2Q6NUT2 758 aa24.74■■□□□ 1.55
CLN3-260ENST00000637578 KSR2Q6VAB6 950 aa24.74■■□□□ 1.55
CLN3-260ENST00000637578 ZNF428Q96B54 188 aa24.74■■□□□ 1.55
CLN3-260ENST00000637578 ZNF277Q9NRM2 450 aaPredicted RBP24.74■■□□□ 1.55
CLN3-260ENST00000637578 BBOX1O75936 387 aa24.73■■□□□ 1.55
CLN3-260ENST00000637578 SF3B3Q15393 1217 aaKnown RBP24.73■■□□□ 1.55
CLN3-260ENST00000637578 CCDC191Q8NCU4 936 aa24.73■■□□□ 1.55
CLN3-260ENST00000637578 MYD88Q99836 296 aa24.73■■□□□ 1.55
CLN3-260ENST00000637578 ATP6V0A2Q9Y487 856 aa24.73■■□□□ 1.55
CLN3-260ENST00000637578 TCERG1O14776 1098 aaKnown RBP24.72■■□□□ 1.55
CLN3-260ENST00000637578 SLC4A2P04920 1241 aa24.72■■□□□ 1.55
CLN3-260ENST00000637578 ZBTB38Q8NAP3 1195 aaPredicted RBP24.72■■□□□ 1.55
CLN3-260ENST00000637578 LAMB2P55268 1798 aa24.72■■□□□ 1.55
CLN3-260ENST00000637578 POTECB2RU33 542 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 EXOSC9Q06265 439 aaKnown RBP24.71■■□□□ 1.55
CLN3-260ENST00000637578 SLC51AQ86UW1 340 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 RBM46Q8TBY0 533 aaKnown RBP24.71■■□□□ 1.55
CLN3-260ENST00000637578 MAP3K2Q9Y2U5 619 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 PI4KAP2A4QPH2 592 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 VEGFAP15692 232 aaPredicted RBP24.71■■□□□ 1.55
CLN3-260ENST00000637578 IARSP41252 1262 aaKnown RBP24.71■■□□□ 1.55
CLN3-260ENST00000637578 G2E3Q7L622 706 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 PI4KAP1Q8N8J0 262 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 MYH16Q9H6N6 1097 aa24.71■■□□□ 1.55
CLN3-260ENST00000637578 DDX60Q8IY21 1712 aaKnown RBP24.7■■□□□ 1.54
CLN3-260ENST00000637578 DDX46Q7L014 1031 aaKnown RBP24.7■■□□□ 1.54
CLN3-260ENST00000637578 IRS4O14654 1257 aaPredicted RBP24.69■■□□□ 1.54
CLN3-260ENST00000637578 GRAPQ13588 217 aa24.69■■□□□ 1.54
CLN3-260ENST00000637578 SP8Q8IXZ3 490 aa24.69■■□□□ 1.54
CLN3-260ENST00000637578 GRAPLQ8TC17 118 aaPredicted RBP24.69■■□□□ 1.54
CLN3-260ENST00000637578 WDR90Q96KV7 1748 aa24.69■■□□□ 1.54
CLN3-260ENST00000637578 PCCAP05165 728 aaPredicted RBP24.68■■□□□ 1.54
CLN3-260ENST00000637578 HSPA6P17066 643 aa24.68■■□□□ 1.54
CLN3-260ENST00000637578 CWC25Q9NXE8 425 aaPredicted RBP24.68■■□□□ 1.54
CLN3-260ENST00000637578 FZD9O00144 591 aa24.67■■□□□ 1.54
CLN3-260ENST00000637578 IGKV5-2P06315 115 aa24.67■■□□□ 1.54
CLN3-260ENST00000637578 RTL5Q5HYW3 569 aaPredicted RBP24.67■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms