RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 UBE3BQ7Z3V4 1068 aa22.33■■□□□ 1.17
PTCHD3-202ENST00000622555 NLRP10Q86W26 655 aa22.33■■□□□ 1.17
PTCHD3-202ENST00000622555 BCL2L12Q9HB09 334 aa22.33■■□□□ 1.17
PTCHD3-202ENST00000622555 JARID2Q92833 1246 aaPredicted RBP22.32■■□□□ 1.16
PTCHD3-202ENST00000622555 STK32BQ9NY57 414 aa22.32■■□□□ 1.16
PTCHD3-202ENST00000622555 HDAC5Q9UQL6 1122 aa22.32■■□□□ 1.16
PTCHD3-202ENST00000622555 NIP7Q9Y221 180 aaKnown RBP eCLIP22.32■■□□□ 1.16
PTCHD3-202ENST00000622555 UBN2Q6ZU65 1347 aa22.32■■□□□ 1.16
PTCHD3-202ENST00000622555 ANO8Q9HCE9 1232 aaPredicted RBP22.31■■□□□ 1.16
PTCHD3-202ENST00000622555 H7C1W4 665 aa22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 PARP10Q53GL7 1025 aa22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 RTL5Q5HYW3 569 aaPredicted RBP22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 CEP85Q6P2H3 762 aa22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 FLAD1Q8NFF5 587 aa22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 UPF1Q92900 1129 aaKnown RBP eCLIP22.3■■□□□ 1.16
PTCHD3-202ENST00000622555 SLC15A2Q16348 729 aa22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 TBC1D9BQ66K14 1250 aa22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 BICDL1Q6ZP65 573 aa22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 SUCLG2Q96I99 432 aa22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 RWDD1Q9H446 243 aaPredicted RBP22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 QSER1Q2KHR3 1735 aa22.29■■□□□ 1.16
PTCHD3-202ENST00000622555 MSH5O43196 834 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 PCCAP05165 728 aaPredicted RBP22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 RPAP2Q8IXW5 612 aaPredicted RBP22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 ANKRD44Q8N8A2 993 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 IGHDP01880 384 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 CASP7P55210 303 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 SUSD4Q5VX71 490 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 COL23A1Q86Y22 540 aaPredicted RBP22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 ZBTB38Q8NAP3 1195 aaPredicted RBP22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 TRMT112Q9UI30 125 aaKnown RBP22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 PNPLA7Q6ZV29 1317 aa22.28■■□□□ 1.16
PTCHD3-202ENST00000622555 FAM177BA6PVY3 158 aa22.27■■□□□ 1.16
PTCHD3-202ENST00000622555 HDAC1Q13547 482 aaPredicted RBP22.27■■□□□ 1.16
PTCHD3-202ENST00000622555 SIRT2Q8IXJ6 389 aa22.27■■□□□ 1.16
PTCHD3-202ENST00000622555 GYS1P13807 737 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 PPP1R42Q7Z4L9 355 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 FAM89AQ96GI7 184 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 SETDB2Q96T68 719 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 UTP14AQ9BVJ6 771 aaKnown RBP22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 COL24A1Q17RW2 1714 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 KAZALD1Q96I82 304 aa22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 BICC1Q9H694 974 aaKnown RBP22.26■■□□□ 1.15
PTCHD3-202ENST00000622555 ATP8B2P98198 1209 aa22.25■■□□□ 1.15
PTCHD3-202ENST00000622555 HMMRO75330 724 aa22.24■■□□□ 1.15
PTCHD3-202ENST00000622555 CENPQQ7L2Z9 268 aaPredicted RBP22.24■■□□□ 1.15
PTCHD3-202ENST00000622555 KDM2BQ8NHM5 1336 aa22.24■■□□□ 1.15
PTCHD3-202ENST00000622555 MYH3P11055 1940 aa22.24■■□□□ 1.15
PTCHD3-202ENST00000622555 CDHR2Q9BYE9 1310 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 EPHA10Q5JZY3 1008 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 SYNE4Q8N205 404 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 SH3TC1Q8TE82 1336 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 PNMA6EA0A0J9YXQ4 647 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 NTSR2O95665 410 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 NFIXQ14938 502 aa22.23■■□□□ 1.15
PTCHD3-202ENST00000622555 IRS4O14654 1257 aaPredicted RBP22.21■■□□□ 1.15
PTCHD3-202ENST00000622555 SRGAP3O43295 1099 aa22.21■■□□□ 1.15
PTCHD3-202ENST00000622555 LAMB2P55268 1798 aa22.21■■□□□ 1.15
PTCHD3-202ENST00000622555 CARMIL3Q8ND23 1372 aa22.21■■□□□ 1.15
PTCHD3-202ENST00000622555 FOXO4P98177 505 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 MTX1Q13505 466 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 ILDR2Q71H61 639 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 NBPF5PQ86XG9 351 aaPredicted RBP22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 NUTM1Q86Y26 1132 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 NYXQ9GZU5 481 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 DDX60Q8IY21 1712 aaKnown RBP22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 PLA2G12BQ9BX93 195 aa22.2■■□□□ 1.14
PTCHD3-202ENST00000622555 GTF2E1P29083 439 aaPredicted RBP22.19■■□□□ 1.14
PTCHD3-202ENST00000622555 RABL6Q3YEC7 729 aaPredicted RBP22.19■■□□□ 1.14
PTCHD3-202ENST00000622555 NLGN1Q8N2Q7 840 aa22.19■■□□□ 1.14
PTCHD3-202ENST00000622555 SSH3Q8TE77 659 aa22.19■■□□□ 1.14
PTCHD3-202ENST00000622555 POLA2Q14181 598 aa22.18■■□□□ 1.14
PTCHD3-202ENST00000622555 LMBR1LQ6UX01 489 aa22.18■■□□□ 1.14
PTCHD3-202ENST00000622555 HCLS1P14317 486 aaPredicted RBP22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 TM4SF1P30408 202 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 TPTE2Q6XPS3 522 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 CHMP3Q9Y3E7 222 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 NPHP1O15259 732 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 PDE8AO60658 829 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 HSP90B1P14625 803 aaKnown RBP22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 ERFEQ4G0M1 354 aa22.17■■□□□ 1.14
PTCHD3-202ENST00000622555 GCC1Q96CN9 775 aa22.16■■□□□ 1.14
PTCHD3-202ENST00000622555 TSHZ2Q9NRE2 1034 aa22.16■■□□□ 1.14
PTCHD3-202ENST00000622555 CASZ1Q86V15 1759 aa22.16■■□□□ 1.14
PTCHD3-202ENST00000622555 CTSWP56202 376 aa22.15■■□□□ 1.14
PTCHD3-202ENST00000622555 MSL1Q68DK7 614 aa22.15■■□□□ 1.14
PTCHD3-202ENST00000622555 SMC5Q8IY18 1101 aa22.15■■□□□ 1.14
PTCHD3-202ENST00000622555 DCTPP1Q9H773 170 aa22.15■■□□□ 1.14
PTCHD3-202ENST00000622555 ABCC12Q96J65 1359 aa22.14■■□□□ 1.13
PTCHD3-202ENST00000622555 DDR1Q08345 913 aa22.14■■□□□ 1.13
PTCHD3-202ENST00000622555 CNBD1Q8NA66 436 aa22.14■■□□□ 1.13
PTCHD3-202ENST00000622555 POLRMTO00411 1230 aaKnown RBP22.13■■□□□ 1.13
PTCHD3-202ENST00000622555 SERPINB2P05120 415 aa22.13■■□□□ 1.13
PTCHD3-202ENST00000622555 CCDC85AQ96PX6 553 aaPredicted RBP22.13■■□□□ 1.13
PTCHD3-202ENST00000622555 CSF1RP07333 972 aa22.12■■□□□ 1.13
PTCHD3-202ENST00000622555 CCDC24Q8N4L8 307 aa22.12■■□□□ 1.13
PTCHD3-202ENST00000622555 TTLL11Q8NHH1 800 aa22.12■■□□□ 1.13
PTCHD3-202ENST00000622555 PDGFDQ9GZP0 370 aaPredicted RBP22.12■■□□□ 1.13
PTCHD3-202ENST00000622555 EXOC6BQ9Y2D4 811 aa22.12■■□□□ 1.13
PTCHD3-202ENST00000622555 SURF6O75683 361 aaKnown RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms