RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ANAPC15P60006 121 aa25.82■■□□□ 1.72
LIME1-210ENST00000621325 LSG1Q9H089 658 aaKnown RBP25.82■■□□□ 1.72
LIME1-210ENST00000621325 ADAMTS2O95450 1211 aa25.82■■□□□ 1.72
LIME1-210ENST00000621325 HSPA4P34932 840 aa25.82■■□□□ 1.72
LIME1-210ENST00000621325 TFCP2Q12800 502 aa25.82■■□□□ 1.72
LIME1-210ENST00000621325 BOLA2Q9H3K6 86 aa25.81■■□□□ 1.72
LIME1-210ENST00000621325 DIAPH3Q9NSV4 1193 aa25.81■■□□□ 1.72
LIME1-210ENST00000621325 RAD50Q92878 1312 aa25.81■■□□□ 1.72
LIME1-210ENST00000621325 SSFA2P28290 1259 aa25.8■■□□□ 1.72
LIME1-210ENST00000621325 ZGPATQ8N5A5 531 aaKnown RBP25.8■■□□□ 1.72
LIME1-210ENST00000621325 UPF3BQ9BZI7 483 aaKnown RBP25.8■■□□□ 1.72
LIME1-210ENST00000621325 CHMP3Q9Y3E7 222 aa25.8■■□□□ 1.72
LIME1-210ENST00000621325 KAT6BQ8WYB5 2073 aa25.8■■□□□ 1.72
LIME1-210ENST00000621325 EVI5LQ96CN4 794 aa25.8■■□□□ 1.72
LIME1-210ENST00000621325 COL22A1Q8NFW1 1626 aaPredicted RBP25.8■■□□□ 1.72
LIME1-210ENST00000621325 IL17RAQ96F46 866 aa25.79■■□□□ 1.72
LIME1-210ENST00000621325 LTBP4Q8N2S1 1624 aa25.79■■□□□ 1.72
LIME1-210ENST00000621325 EXOC5O00471 708 aa25.78■■□□□ 1.72
LIME1-210ENST00000621325 CCDC191Q8NCU4 936 aa25.78■■□□□ 1.72
LIME1-210ENST00000621325 ITGB4P16144 1822 aa25.78■■□□□ 1.72
LIME1-210ENST00000621325 TJP1Q07157 1748 aa25.78■■□□□ 1.72
LIME1-210ENST00000621325 SLC4A9Q96Q91 983 aa25.78■■□□□ 1.72
LIME1-210ENST00000621325 DBNLQ9UJU6 430 aaKnown RBP25.78■■□□□ 1.72
LIME1-210ENST00000621325 EPB41L2O43491 1005 aaKnown RBP25.77■■□□□ 1.72
LIME1-210ENST00000621325 TNNI3KQ59H18 835 aa25.77■■□□□ 1.72
LIME1-210ENST00000621325 SYTL4Q96C24 671 aaPredicted RBP25.77■■□□□ 1.72
LIME1-210ENST00000621325 FPGT-TNNI3KV9GXZ4 949 aa25.77■■□□□ 1.72
LIME1-210ENST00000621325 NOL8Q76FK4 1167 aaKnown RBP25.77■■□□□ 1.72
LIME1-210ENST00000621325 BCL9O00512 1426 aa25.77■■□□□ 1.72
LIME1-210ENST00000621325 TMX3Q96JJ7 454 aa25.76■■□□□ 1.71
LIME1-210ENST00000621325 PKP1Q13835 747 aa25.76■■□□□ 1.71
LIME1-210ENST00000621325 KIAA1211Q6ZU35 1233 aa25.76■■□□□ 1.71
LIME1-210ENST00000621325 RASEFQ8IZ41 740 aa25.76■■□□□ 1.71
LIME1-210ENST00000621325 PTH1RQ03431 593 aa25.75■■□□□ 1.71
LIME1-210ENST00000621325 EDC3Q96F86 508 aaKnown RBP25.75■■□□□ 1.71
LIME1-210ENST00000621325 FAM227BQ96M60 508 aa25.75■■□□□ 1.71
LIME1-210ENST00000621325 ARXQ96QS3 562 aa25.75■■□□□ 1.71
LIME1-210ENST00000621325 ISCA1Q9BUE6 129 aa25.75■■□□□ 1.71
LIME1-210ENST00000621325 TEX13AQ9BXU3 409 aaPredicted RBP25.75■■□□□ 1.71
LIME1-210ENST00000621325 SNX14Q9Y5W7 946 aa25.75■■□□□ 1.71
LIME1-210ENST00000621325 TCIRG1Q13488 830 aa25.74■■□□□ 1.71
LIME1-210ENST00000621325 STARD3NLO95772 234 aa25.74■■□□□ 1.71
LIME1-210ENST00000621325 RUFY2Q8WXA3 655 aa25.74■■□□□ 1.71
LIME1-210ENST00000621325 TRAK2O60296 914 aa25.73■■□□□ 1.71
LIME1-210ENST00000621325 DBNDD2Q9BQY9 259 aa25.73■■□□□ 1.71
LIME1-210ENST00000621325 NMIQ13287 307 aaPredicted RBP25.73■■□□□ 1.71
LIME1-210ENST00000621325 ATG9AQ7Z3C6 839 aa25.73■■□□□ 1.71
LIME1-210ENST00000621325 ZNF594Q96JF6 807 aaPredicted RBP25.73■■□□□ 1.71
LIME1-210ENST00000621325 NDUFB9Q9Y6M9 179 aa25.73■■□□□ 1.71
LIME1-210ENST00000621325 DDX11L8A8MPP1 907 aa25.72■■□□□ 1.71
LIME1-210ENST00000621325 PRIM1P49642 420 aaKnown RBP25.72■■□□□ 1.71
LIME1-210ENST00000621325 GBP4Q96PP9 640 aa25.72■■□□□ 1.71
LIME1-210ENST00000621325 FSD1Q9BTV5 496 aa25.72■■□□□ 1.71
LIME1-210ENST00000621325 PLCH1Q4KWH8 1693 aa25.71■■□□□ 1.71
LIME1-210ENST00000621325 NUTM2BA6NNL0 878 aaPredicted RBP25.71■■□□□ 1.71
LIME1-210ENST00000621325 NUTM2EB1AL46 878 aaPredicted RBP25.71■■□□□ 1.71
LIME1-210ENST00000621325 KIF6Q6ZMV9 814 aa25.71■■□□□ 1.71
LIME1-210ENST00000621325 NUTM2AQ8IVF1 878 aaPredicted RBP25.71■■□□□ 1.71
LIME1-210ENST00000621325 GZF1Q9H116 711 aaPredicted RBP25.71■■□□□ 1.71
LIME1-210ENST00000621325 CCDC9Q9Y3X0 531 aaKnown RBP25.71■■□□□ 1.71
LIME1-210ENST00000621325 CYP19A1P11511 503 aaPredicted RBP25.7■■□□□ 1.7
LIME1-210ENST00000621325 MCM2P49736 904 aa25.7■■□□□ 1.7
LIME1-210ENST00000621325 A0A0D9SFI3 127 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 ATP5JP18859 108 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 CWC22Q9HCG8 908 aaKnown RBP25.69■■□□□ 1.7
LIME1-210ENST00000621325 CYP2E1P05181 493 aaPredicted RBP25.69■■□□□ 1.7
LIME1-210ENST00000621325 HLFQ16534 295 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 LRRC24Q50LG9 513 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 FAM43AQ8N2R8 423 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 SPATA31A1Q5TZJ5 1347 aa25.69■■□□□ 1.7
LIME1-210ENST00000621325 PIP4K2BP78356 416 aa25.68■■□□□ 1.7
LIME1-210ENST00000621325 FAM89AQ96GI7 184 aa25.68■■□□□ 1.7
LIME1-210ENST00000621325 ZBTB1Q9Y2K1 713 aa25.68■■□□□ 1.7
LIME1-210ENST00000621325 PHLPP1O60346 1717 aa25.68■■□□□ 1.7
LIME1-210ENST00000621325 PRPF40BQ6NWY9 871 aaKnown RBP25.67■■□□□ 1.7
LIME1-210ENST00000621325 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.67■■□□□ 1.7
LIME1-210ENST00000621325 CCDC171Q6TFL3 1326 aa25.67■■□□□ 1.7
LIME1-210ENST00000621325 MAP3K15Q6ZN16 1313 aa25.67■■□□□ 1.7
LIME1-210ENST00000621325 NUCB2P80303 420 aa25.67■■□□□ 1.7
LIME1-210ENST00000621325 SYNE4Q8N205 404 aa25.67■■□□□ 1.7
LIME1-210ENST00000621325 PUS3Q9BZE2 481 aaKnown RBP25.67■■□□□ 1.7
LIME1-210ENST00000621325 LRP6O75581 1613 aa25.67■■□□□ 1.7
LIME1-210ENST00000621325 CPA1P15085 419 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 TRIM28Q13263 835 aaKnown RBP25.66■■□□□ 1.7
LIME1-210ENST00000621325 CUL4AQ13619 759 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 CCDC85AQ96PX6 553 aaPredicted RBP25.66■■□□□ 1.7
LIME1-210ENST00000621325 A0A0G2JS52 829 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 HIP1O00291 1037 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 GPTP24298 496 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 ZDHHC9Q9Y397 364 aa25.66■■□□□ 1.7
LIME1-210ENST00000621325 WNK3Q9BYP7 1800 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 BAG4O95429 457 aaKnown RBP25.65■■□□□ 1.7
LIME1-210ENST00000621325 CHGBP05060 677 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 TIMM10P62072 90 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 DNAJC2Q99543 621 aaKnown RBP25.65■■□□□ 1.7
LIME1-210ENST00000621325 EYA2O00167 538 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 DDB1Q16531 1140 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 GIGYF2Q6Y7W6 1299 aaKnown RBP25.65■■□□□ 1.7
LIME1-210ENST00000621325 NEUROD6Q96NK8 337 aa25.65■■□□□ 1.7
LIME1-210ENST00000621325 ADCK5Q3MIX3 580 aa25.64■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms