RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	TIAM2	Q8IVF5	1701 aa		32.71	■■■□□ 2.83
VEGFA-228	ENST00000617771	RPGR	Q92834	1020 aa	Known RBP	32.71	■■■□□ 2.83
VEGFA-228	ENST00000617771	UTP14A	Q9BVJ6	771 aa	Known RBP	32.71	■■■□□ 2.83
VEGFA-228	ENST00000617771	GLTPD2	A6NH11	291 aa		32.7	■■■□□ 2.83
VEGFA-228	ENST00000617771	RRAGC	Q9HB90	399 aa		32.7	■■■□□ 2.83
VEGFA-228	ENST00000617771	HYPK	Q9NX55	129 aa		32.69	■■■□□ 2.82
VEGFA-228	ENST00000617771	RNF123	Q5XPI4	1314 aa		32.69	■■■□□ 2.82
VEGFA-228	ENST00000617771	CCDC88A	Q3V6T2	1871 aa		32.69	■■■□□ 2.82
VEGFA-228	ENST00000617771	HSPA6	P17066	643 aa		32.68	■■■□□ 2.82
VEGFA-228	ENST00000617771	TCIRG1	Q13488	830 aa		32.68	■■■□□ 2.82
VEGFA-228	ENST00000617771	DPY19L2	Q6NUT2	758 aa		32.67	■■■□□ 2.82
VEGFA-228	ENST00000617771	RTKN2	Q8IZC4	609 aa		32.67	■■■□□ 2.82
VEGFA-228	ENST00000617771	ANKRD36C	Q5JPF3	1778 aa		32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	HOXA10	P31260	410 aa	Predicted RBP	32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	CCDC27	Q2M243	656 aa		32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	NLRP10	Q86W26	655 aa		32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	PLBD2	Q8NHP8	589 aa		32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	RBM17	Q96I25	401 aa	Known RBP	32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	NLRP3	Q96P20	1036 aa		32.66	■■■□□ 2.82
VEGFA-228	ENST00000617771	FKBP4	Q02790	459 aa	Known RBP eCLIP	32.65	■■■□□ 2.82
VEGFA-228	ENST00000617771	ANKRD13D	Q6ZTN6	518 aa		32.65	■■■□□ 2.82
VEGFA-228	ENST00000617771	RBM46	Q8TBY0	533 aa	Known RBP	32.65	■■■□□ 2.82
VEGFA-228	ENST00000617771	SLC10A5	Q5PT55	438 aa		32.64	■■■□□ 2.82
VEGFA-228	ENST00000617771	CHMP4A	Q9BY43	222 aa		32.63	■■■□□ 2.81
VEGFA-228	ENST00000617771	DICER1	Q9UPY3	1922 aa	Known RBP	32.63	■■■□□ 2.81
VEGFA-228	ENST00000617771	ELL2	O00472	640 aa	Predicted RBP	32.62	■■■□□ 2.81
VEGFA-228	ENST00000617771	CC2D2B	Q6DHV5	1058 aa		32.62	■■■□□ 2.81
VEGFA-228	ENST00000617771	OLFM4	Q6UX06	510 aa		32.62	■■■□□ 2.81
VEGFA-228	ENST00000617771	CRAMP1	Q96RY5	1269 aa		32.62	■■■□□ 2.81
VEGFA-228	ENST00000617771	VEGFA	P15692	232 aa	Predicted RBP	32.61	■■■□□ 2.81
VEGFA-228	ENST00000617771	NCBP3	Q53F19	620 aa	Known RBP	32.61	■■■□□ 2.81
VEGFA-228	ENST00000617771	TRMT112	Q9UI30	125 aa	Known RBP	32.61	■■■□□ 2.81
VEGFA-228	ENST00000617771	C3orf67	Q6ZVT6	689 aa		32.6	■■■□□ 2.81
VEGFA-228	ENST00000617771	WWC1	Q8IX03	1113 aa		32.6	■■■□□ 2.81
VEGFA-228	ENST00000617771	SH3TC1	Q8TE82	1336 aa		32.59	■■■□□ 2.81
VEGFA-228	ENST00000617771	C8orf58	Q8NAV2	365 aa		32.59	■■■□□ 2.81
VEGFA-228	ENST00000617771	ZNF277	Q9NRM2	450 aa	Predicted RBP	32.58	■■■□□ 2.81
VEGFA-228	ENST00000617771	GOLGA2	Q08379	1002 aa		32.57	■■■□□ 2.8
VEGFA-228	ENST00000617771	FSTL1	Q12841	308 aa		32.57	■■■□□ 2.8
VEGFA-228	ENST00000617771	GRIPAP1	Q4V328	841 aa		32.57	■■■□□ 2.8
VEGFA-228	ENST00000617771	PPEF1	O14829	653 aa	Predicted RBP	32.56	■■■□□ 2.8
VEGFA-228	ENST00000617771	CCDC30	Q5VVM6	783 aa		32.56	■■■□□ 2.8
VEGFA-228	ENST00000617771	SYNE4	Q8N205	404 aa		32.56	■■■□□ 2.8
VEGFA-228	ENST00000617771	PSMD1	Q99460	953 aa		32.56	■■■□□ 2.8
VEGFA-228	ENST00000617771	ISCA1	Q9BUE6	129 aa		32.56	■■■□□ 2.8
VEGFA-228	ENST00000617771	HCLS1	P14317	486 aa	Predicted RBP	32.55	■■■□□ 2.8
VEGFA-228	ENST00000617771	IL16	Q14005	1332 aa		32.54	■■■□□ 2.8
VEGFA-228	ENST00000617771	RIC3	Q7Z5B4	369 aa		32.54	■■■□□ 2.8
VEGFA-228	ENST00000617771	TSR2	Q969E8	191 aa	Known RBP	32.54	■■■□□ 2.8
VEGFA-228	ENST00000617771	TMX4	Q9H1E5	349 aa	Predicted RBP	32.54	■■■□□ 2.8
VEGFA-228	ENST00000617771	WDR90	Q96KV7	1748 aa		32.54	■■■□□ 2.8
VEGFA-228	ENST00000617771	SNED1	Q8TER0	1413 aa		32.53	■■■□□ 2.8
VEGFA-228	ENST00000617771	IARS	P41252	1262 aa	Known RBP	32.53	■■■□□ 2.8
VEGFA-228	ENST00000617771	PHAX	Q9H814	394 aa	Known RBP	32.53	■■■□□ 2.8
VEGFA-228	ENST00000617771	ATP5J2-PTCD1	G3V325	749 aa		32.52	■■■□□ 2.8
VEGFA-228	ENST00000617771	APLP1	P51693	650 aa		32.52	■■■□□ 2.8
VEGFA-228	ENST00000617771	SMC1B	Q8NDV3	1235 aa		32.52	■■■□□ 2.8
VEGFA-228	ENST00000617771	TRIM28	Q13263	835 aa	Known RBP	32.51	■■■□□ 2.79
VEGFA-228	ENST00000617771	ABCC4	O15439	1325 aa		32.51	■■■□□ 2.79
VEGFA-228	ENST00000617771	TCERG1	O14776	1098 aa	Known RBP	32.5	■■■□□ 2.79
VEGFA-228	ENST00000617771	DDN	O94850	711 aa	Predicted RBP	32.5	■■■□□ 2.79
VEGFA-228	ENST00000617771	TSPYL6	Q8N831	410 aa		32.5	■■■□□ 2.79
VEGFA-228	ENST00000617771	POTEC	B2RU33	542 aa		32.49	■■■□□ 2.79
VEGFA-228	ENST00000617771	DDX58	O95786	925 aa	Known RBP	32.49	■■■□□ 2.79
VEGFA-228	ENST00000617771	DDX46	Q7L014	1031 aa	Known RBP	32.49	■■■□□ 2.79
VEGFA-228	ENST00000617771	BBOX1	O75936	387 aa		32.48	■■■□□ 2.79
VEGFA-228	ENST00000617771	ZNF428	Q96B54	188 aa		32.48	■■■□□ 2.79
VEGFA-228	ENST00000617771	ATP6V0A2	Q9Y487	856 aa		32.48	■■■□□ 2.79
VEGFA-228	ENST00000617771	JDP2	Q8WYK2	163 aa		32.47	■■■□□ 2.79
VEGFA-228	ENST00000617771	FAM89A	Q96GI7	184 aa		32.47	■■■□□ 2.79
VEGFA-228	ENST00000617771	STK31	Q9BXU1	1019 aa		32.47	■■■□□ 2.79
VEGFA-228	ENST00000617771	LAMB2	P55268	1798 aa		32.47	■■■□□ 2.79
VEGFA-228	ENST00000617771	WDR63	Q8IWG1	891 aa		32.46	■■■□□ 2.79
VEGFA-228	ENST00000617771	SALL2	Q9Y467	1007 aa	Predicted RBP	32.46	■■■□□ 2.79
VEGFA-228	ENST00000617771	TWISTNB	Q3B726	338 aa	Predicted RBP	32.45	■■■□□ 2.79
VEGFA-228	ENST00000617771	FAM9B	Q8IZU0	186 aa		32.45	■■■□□ 2.79
VEGFA-228	ENST00000617771	FZD9	O00144	591 aa		32.44	■■■□□ 2.78
VEGFA-228	ENST00000617771	GRAP	Q13588	217 aa		32.44	■■■□□ 2.78
VEGFA-228	ENST00000617771	GRAPL	Q8TC17	118 aa	Predicted RBP	32.44	■■■□□ 2.78
VEGFA-228	ENST00000617771	MYD88	Q99836	296 aa		32.44	■■■□□ 2.78
VEGFA-228	ENST00000617771	ZNF541	Q9H0D2	1346 aa		32.44	■■■□□ 2.78
VEGFA-228	ENST00000617771	IQCA1L	A6NCM1	817 aa		32.43	■■■□□ 2.78
VEGFA-228	ENST00000617771	L3MBTL3	Q96JM7	780 aa	Predicted RBP	32.43	■■■□□ 2.78
VEGFA-228	ENST00000617771	SLC51A	Q86UW1	340 aa		32.42	■■■□□ 2.78
VEGFA-228	ENST00000617771	SP8	Q8IXZ3	490 aa		32.42	■■■□□ 2.78
VEGFA-228	ENST00000617771	DDX60	Q8IY21	1712 aa	Known RBP	32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	HSP90B1	P14625	803 aa	Known RBP	32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	SF3B3	Q15393	1217 aa	Known RBP	32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	RTL5	Q5HYW3	569 aa	Predicted RBP	32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	TMC4	Q7Z404	712 aa		32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	LARGE2	Q8N3Y3	721 aa		32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	CCDC191	Q8NCU4	936 aa		32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	FANCI	Q9NVI1	1328 aa		32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	CEP350	Q5VT06	3117 aa		32.41	■■■□□ 2.78
VEGFA-228	ENST00000617771	IRS4	O14654	1257 aa	Predicted RBP	32.4	■■■□□ 2.78
VEGFA-228	ENST00000617771	SUPT20H	Q8NEM7	779 aa		32.4	■■■□□ 2.78
VEGFA-228	ENST00000617771	METTL22	Q9BUU2	404 aa	Predicted RBP	32.4	■■■□□ 2.78
VEGFA-228	ENST00000617771	EIF6	P56537	245 aa	Known RBP	32.39	■■■□□ 2.78
VEGFA-228	ENST00000617771	VPS33B	Q9H267	617 aa		32.39	■■■□□ 2.78

Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms