RNA–Protein interactions for RNA: ENST00000617585.1

ARHGEF1-223, Transcript of Rho guanine nucleotide exchange factor 1, human

TSL 2

Gene ARHGEF1, Length 737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ARHGEF1-223	ENST00000617585	ZNF219	Q9P2Y4	722 aa	Predicted RBP	29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	DBF4	Q9UBU7	674 aa	Predicted RBP	29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	RNF123	Q5XPI4	1314 aa		29.08	■■■□□ 2.25
ARHGEF1-223	ENST00000617585	GLTPD2	A6NH11	291 aa		29.07	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	ANP32C	O43423	234 aa		29.07	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	SLC10A5	Q5PT55	438 aa		29.07	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	CCDC93	Q567U6	631 aa		29.06	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	TCIRG1	Q13488	830 aa		29.05	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	SNED1	Q8TER0	1413 aa		29.04	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	AIMP1	Q12904	312 aa	Known RBP	29.04	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	UTP14A	Q9BVJ6	771 aa	Known RBP	29.04	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	HSPA6	P17066	643 aa		29.03	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	HYPK	Q9NX55	129 aa		29.03	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	WDR90	Q96KV7	1748 aa		29.03	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	NLRP10	Q86W26	655 aa		29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	PLBD2	Q8NHP8	589 aa		29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	RBM46	Q8TBY0	533 aa	Known RBP	29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	MRS2	Q9HD23	443 aa		29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	LAMB2	P55268	1798 aa		29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	CEP350	Q5VT06	3117 aa		29.02	■■■□□ 2.24
ARHGEF1-223	ENST00000617585	RTKN2	Q8IZC4	609 aa		29.01	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	CRAMP1	Q96RY5	1269 aa		29.01	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	RRAGC	Q9HB90	399 aa		29.01	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	FKBP4	Q02790	459 aa	Known RBP eCLIP	29	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	ANKRD13D	Q6ZTN6	518 aa		29	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	CC2D2B	Q6DHV5	1058 aa		28.99	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	RPGR	Q92834	1020 aa	Known RBP	28.99	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	NLRP3	Q96P20	1036 aa		28.99	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	C3orf67	Q6ZVT6	689 aa		28.98	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	WWC1	Q8IX03	1113 aa		28.98	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	DPY19L2	Q6NUT2	758 aa		28.97	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	C8orf58	Q8NAV2	365 aa		28.97	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	RBM17	Q96I25	401 aa	Known RBP	28.97	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	ISCA1	Q9BUE6	129 aa		28.97	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	CHMP4A	Q9BY43	222 aa		28.97	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	VEGFA	P15692	232 aa	Predicted RBP	28.96	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	GRIPAP1	Q4V328	841 aa		28.96	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	OLFM4	Q6UX06	510 aa		28.96	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	IL16	Q14005	1332 aa		28.95	■■■□□ 2.23
ARHGEF1-223	ENST00000617585	TRIM28	Q13263	835 aa	Known RBP	28.95	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	C16orf71	Q8IYS4	520 aa	Predicted RBP	28.95	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	PSMD1	Q99460	953 aa		28.95	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	DDX60	Q8IY21	1712 aa	Known RBP	28.94	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	POTEC	B2RU33	542 aa		28.94	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	FSTL1	Q12841	308 aa		28.94	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	SH3TC1	Q8TE82	1336 aa		28.94	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	ELL2	O00472	640 aa	Predicted RBP	28.93	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	TRMT112	Q9UI30	125 aa	Known RBP	28.93	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	CCDC30	Q5VVM6	783 aa		28.9	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	SYNE4	Q8N205	404 aa		28.9	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	TSPYL6	Q8N831	410 aa		28.9	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	PHAX	Q9H814	394 aa	Known RBP	28.9	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	ZNF277	Q9NRM2	450 aa	Predicted RBP	28.9	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	IARS	P41252	1262 aa	Known RBP	28.89	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	SCN4A	P35499	1836 aa		28.89	■■■□□ 2.22
ARHGEF1-223	ENST00000617585	PPEF1	O14829	653 aa	Predicted RBP	28.88	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	HCLS1	P14317	486 aa	Predicted RBP	28.88	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	TSR2	Q969E8	191 aa	Known RBP	28.88	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	ABCC4	O15439	1325 aa		28.88	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	CACNA1F	O60840	1977 aa		28.88	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	APLP1	P51693	650 aa		28.87	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	GOLGA2	Q08379	1002 aa		28.87	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	FZD9	O00144	591 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	BBOX1	O75936	387 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	DDN	O94850	711 aa	Predicted RBP	28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	RIC3	Q7Z5B4	369 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	WDR63	Q8IWG1	891 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	SMC1B	Q8NDV3	1235 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	L3MBTL3	Q96JM7	780 aa	Predicted RBP	28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	ATP6V0A2	Q9Y487	856 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	TAF1	P21675	1872 aa		28.86	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	ATP5J2-PTCD1	G3V325	749 aa		28.85	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	SF3B3	Q15393	1217 aa	Known RBP	28.84	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	FAM89A	Q96GI7	184 aa		28.83	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	VPS33B	Q9H267	617 aa		28.83	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	COL4A5	P29400	1685 aa		28.83	■■■□□ 2.21
ARHGEF1-223	ENST00000617585	TWISTNB	Q3B726	338 aa	Predicted RBP	28.82	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	DDX46	Q7L014	1031 aa	Known RBP	28.82	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	SP8	Q8IXZ3	490 aa		28.82	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	LRRC37A	A6NMS7	1700 aa		28.82	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	DDX58	O95786	925 aa	Known RBP	28.81	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	GRAP	Q13588	217 aa		28.81	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	SLC51A	Q86UW1	340 aa		28.81	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	GRAPL	Q8TC17	118 aa	Predicted RBP	28.81	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	RTFDC1	Q9BY42	306 aa	Predicted RBP	28.81	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	ZNF541	Q9H0D2	1346 aa		28.8	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	TMC4	Q7Z404	712 aa		28.8	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	28.8	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	CCDC191	Q8NCU4	936 aa		28.8	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	METTL22	Q9BUU2	404 aa	Predicted RBP	28.8	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	TMX4	Q9H1E5	349 aa	Predicted RBP	28.79	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	FANCI	Q9NVI1	1328 aa		28.78	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	IQCA1L	A6NCM1	817 aa		28.78	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	JDP2	Q8WYK2	163 aa		28.78	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	MYD88	Q99836	296 aa		28.78	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	STK31	Q9BXU1	1019 aa		28.78	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	TCERG1	O14776	1098 aa	Known RBP	28.77	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	KSR2	Q6VAB6	950 aa		28.77	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	DNAJC5G	Q8N7S2	189 aa		28.77	■■■□□ 2.2
ARHGEF1-223	ENST00000617585	IRS4	O14654	1257 aa	Predicted RBP	28.76	■■■□□ 2.19

Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms