RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 CRAMP1Q96RY5 1269 aa9.97□□□□□ -0.81
CUX1-219ENST00000606749 PRKRIP1Q9H875 184 aaPredicted RBP9.97□□□□□ -0.81
CUX1-219ENST00000606749 LAS1LQ9Y4W2 734 aaKnown RBP9.97□□□□□ -0.81
CUX1-219ENST00000606749 IBTKQ9P2D0 1353 aaPredicted RBP9.97□□□□□ -0.81
CUX1-219ENST00000606749 TIAM2Q8IVF5 1701 aa9.96□□□□□ -0.81
CUX1-219ENST00000606749 ARFGEF2Q9Y6D5 1785 aa9.96□□□□□ -0.81
CUX1-219ENST00000606749 CACNA1SQ13698 1873 aa9.96□□□□□ -0.81
CUX1-219ENST00000606749 FZD9O00144 591 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 IARSP41252 1262 aaKnown RBP9.96□□□□□ -0.82
CUX1-219ENST00000606749 AIMP1Q12904 312 aaKnown RBP9.96□□□□□ -0.82
CUX1-219ENST00000606749 IFFO2Q5TF58 517 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 CC2D2BQ6DHV5 1058 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 C3orf67Q6ZVT6 689 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 JMYQ8N9B5 988 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 XAGE3Q8WTP9 111 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 RBM17Q96I25 401 aaKnown RBP9.96□□□□□ -0.82
CUX1-219ENST00000606749 L3MBTL3Q96JM7 780 aaPredicted RBP9.96□□□□□ -0.82
CUX1-219ENST00000606749 NLRP3Q96P20 1036 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 PSMD1Q99460 953 aa9.96□□□□□ -0.82
CUX1-219ENST00000606749 UTP14AQ9BVJ6 771 aaKnown RBP9.96□□□□□ -0.82
CUX1-219ENST00000606749 DDX21Q9NR30 783 aaKnown RBP eCLIP9.96□□□□□ -0.82
CUX1-219ENST00000606749 IQCA1LA6NCM1 817 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 POTEIP0CG38 1075 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 POTEJP0CG39 1038 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 TCIRG1Q13488 830 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 GRIPAP1Q4V328 841 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 CHADLQ6NUI6 762 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 CFAP44Q96MT7 982 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 ZNF541Q9H0D2 1346 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 RIC1Q4ADV7 1423 aa9.95□□□□□ -0.82
CUX1-219ENST00000606749 SNED1Q8TER0 1413 aa9.94□□□□□ -0.82
CUX1-219ENST00000606749 HSP90AB3PQ58FF7 597 aa9.94□□□□□ -0.82
CUX1-219ENST00000606749 NLRP10Q86W26 655 aa9.94□□□□□ -0.82
CUX1-219ENST00000606749 TAF1DQ9H5J8 278 aaPredicted RBP9.94□□□□□ -0.82
CUX1-219ENST00000606749 APAF1O14727 1248 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 TCERG1O14776 1098 aaKnown RBP9.93□□□□□ -0.82
CUX1-219ENST00000606749 PPEF1O14829 653 aaPredicted RBP9.93□□□□□ -0.82
CUX1-219ENST00000606749 HOXB7P09629 217 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 ZNF853P0CG23 659 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 HCLS1P14317 486 aaPredicted RBP9.93□□□□□ -0.82
CUX1-219ENST00000606749 HDGFL1Q5TGJ6 251 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 DUSP27Q5VZP5 1158 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 ANKRD13DQ6ZTN6 518 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 SLC51AQ86UW1 340 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 LDHDQ86WU2 507 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 JDP2Q8WYK2 163 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 MBIPQ9NS73 344 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 CHPF2Q9P2E5 772 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 DBF4Q9UBU7 674 aaPredicted RBP9.93□□□□□ -0.82
CUX1-219ENST00000606749 HACL1Q9UJ83 578 aa9.93□□□□□ -0.82
CUX1-219ENST00000606749 RNF123Q5XPI4 1314 aa9.92□□□□□ -0.82
CUX1-219ENST00000606749 BBOX1O75936 387 aa9.92□□□□□ -0.82
CUX1-219ENST00000606749 GPC2Q8N158 579 aa9.92□□□□□ -0.82
CUX1-219ENST00000606749 PLBD2Q8NHP8 589 aa9.92□□□□□ -0.82
CUX1-219ENST00000606749 TRMT112Q9UI30 125 aaKnown RBP9.92□□□□□ -0.82
CUX1-219ENST00000606749 ATP6V0A2Q9Y487 856 aa9.92□□□□□ -0.82
CUX1-219ENST00000606749 ITGBL1O95965 494 aaPredicted RBP9.91□□□□□ -0.82
CUX1-219ENST00000606749 EPHX2P34913 555 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 EIF6P56537 245 aaKnown RBP9.91□□□□□ -0.82
CUX1-219ENST00000606749 EAPPQ56P03 285 aaPredicted RBP9.91□□□□□ -0.82
CUX1-219ENST00000606749 SP8Q8IXZ3 490 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 LARGE2Q8N3Y3 721 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 ZNF428Q96B54 188 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 ISCA1Q9BUE6 129 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 TMX4Q9H1E5 349 aaPredicted RBP9.91□□□□□ -0.82
CUX1-219ENST00000606749 VPS33BQ9H267 617 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 CREBZFQ9NS37 354 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 HYPKQ9NX55 129 aa9.91□□□□□ -0.82
CUX1-219ENST00000606749 ABCC4O15439 1325 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 SH3TC1Q8TE82 1336 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 PASKQ96RG2 1323 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 PNMA8AQ86V59 439 aaPredicted RBP9.9□□□□□ -0.82
CUX1-219ENST00000606749 RTFDC1Q9BY42 306 aaPredicted RBP9.9□□□□□ -0.82
CUX1-219ENST00000606749 IFT57Q9NWB7 429 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 CLEC11AQ9Y240 323 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 GJA3Q9Y6H8 435 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 SCN4AP35499 1836 aa9.9□□□□□ -0.82
CUX1-219ENST00000606749 PCNTO95613 3336 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 ATP5J2-PTCD1G3V325 749 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 ELL2O00472 640 aaPredicted RBP9.89□□□□□ -0.83
CUX1-219ENST00000606749 PPIP5K2O43314 1243 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 EPS15P42566 896 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 GNAI1P63096 354 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 CALD1Q05682 793 aaKnown RBP9.89□□□□□ -0.83
CUX1-219ENST00000606749 TRIM28Q13263 835 aaKnown RBP9.89□□□□□ -0.83
CUX1-219ENST00000606749 AOC3Q16853 763 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 DDX46Q7L014 1031 aaKnown RBP9.89□□□□□ -0.83
CUX1-219ENST00000606749 NIM1KQ8IY84 436 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 CNTROBQ8N137 903 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 MPNDQ8N594 471 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 SUPT20HQ8NEM7 779 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 FAM89AQ96GI7 184 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 COL4A5P29400 1685 aa9.89□□□□□ -0.83
CUX1-219ENST00000606749 SCNN1DP51172 638 aa9.88□□□□□ -0.83
CUX1-219ENST00000606749 GRAPQ13588 217 aa9.88□□□□□ -0.83
CUX1-219ENST00000606749 SF3B3Q15393 1217 aaKnown RBP9.88□□□□□ -0.83
CUX1-219ENST00000606749 CCDC184Q52MB2 194 aa9.88□□□□□ -0.83
CUX1-219ENST00000606749 COL13A1Q5TAT6 717 aaPredicted RBP9.88□□□□□ -0.83
CUX1-219ENST00000606749 MAP1SQ66K74 1059 aaPredicted RBP9.88□□□□□ -0.83
CUX1-219ENST00000606749 DPP8Q6V1X1 898 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms