RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 CCDC24Q8N4L8 307 aa24.6■■□□□ 1.53
UPF1-209ENST00000600310 BRIP1Q9BX63 1249 aa24.6■■□□□ 1.53
UPF1-209ENST00000600310 LINS1Q8NG48 757 aa24.59■■□□□ 1.53
UPF1-209ENST00000600310 CWC25Q9NXE8 425 aaPredicted RBP24.59■■□□□ 1.53
UPF1-209ENST00000600310 NEURL1BA8MQ27 555 aa24.58■■□□□ 1.53
UPF1-209ENST00000600310 ERFEQ4G0M1 354 aa24.58■■□□□ 1.53
UPF1-209ENST00000600310 BEND3Q5T5X7 828 aa24.58■■□□□ 1.53
UPF1-209ENST00000600310 NLGN2Q8NFZ4 835 aa24.58■■□□□ 1.53
UPF1-209ENST00000600310 ARHGAP45Q92619 1136 aa24.58■■□□□ 1.53
UPF1-209ENST00000600310 TRMT112Q9UI30 125 aaKnown RBP24.58■■□□□ 1.53
UPF1-209ENST00000600310 DCAF8L1A6NGE4 600 aa24.57■■□□□ 1.52
UPF1-209ENST00000600310 CWF19L2Q2TBE0 894 aaKnown RBP24.57■■□□□ 1.52
UPF1-209ENST00000600310 SLC10A5Q5PT55 438 aa24.57■■□□□ 1.52
UPF1-209ENST00000600310 API5Q9BZZ5 524 aaKnown RBP24.57■■□□□ 1.52
UPF1-209ENST00000600310 SH3TC1Q8TE82 1336 aa24.57■■□□□ 1.52
UPF1-209ENST00000600310 KIF13BQ9NQT8 1826 aa24.56■■□□□ 1.52
UPF1-209ENST00000600310 ABCC12Q96J65 1359 aa24.56■■□□□ 1.52
UPF1-209ENST00000600310 IPO8O15397 1037 aaKnown RBP24.56■■□□□ 1.52
UPF1-209ENST00000600310 YY1P25490 414 aa24.56■■□□□ 1.52
UPF1-209ENST00000600310 PDE6BP35913 854 aa24.56■■□□□ 1.52
UPF1-209ENST00000600310 RCAN3Q9UKA8 241 aa24.56■■□□□ 1.52
UPF1-209ENST00000600310 SLC4A10Q6U841 1118 aa24.55■■□□□ 1.52
UPF1-209ENST00000600310 ZBTB38Q8NAP3 1195 aaPredicted RBP24.55■■□□□ 1.52
UPF1-209ENST00000600310 PDZRN3Q9UPQ7 1066 aa24.55■■□□□ 1.52
UPF1-209ENST00000600310 PXDNLA1KZ92 1463 aa24.54■■□□□ 1.52
UPF1-209ENST00000600310 PCCAP05165 728 aaPredicted RBP24.54■■□□□ 1.52
UPF1-209ENST00000600310 SYNE4Q8N205 404 aa24.54■■□□□ 1.52
UPF1-209ENST00000600310 FAM89AQ96GI7 184 aa24.54■■□□□ 1.52
UPF1-209ENST00000600310 RIC1Q4ADV7 1423 aa24.53■■□□□ 1.52
UPF1-209ENST00000600310 A0A0G2JLW4 131 aa24.53■■□□□ 1.52
UPF1-209ENST00000600310 KLRG2A4D1S0 409 aaPredicted RBP24.53■■□□□ 1.52
UPF1-209ENST00000600310 ALDH1L1O75891 902 aa24.53■■□□□ 1.52
UPF1-209ENST00000600310 DPEP1P16444 411 aa24.53■■□□□ 1.52
UPF1-209ENST00000600310 GCKRQ14397 625 aa24.53■■□□□ 1.52
UPF1-209ENST00000600310 FRAT1Q92837 279 aaPredicted RBP24.53■■□□□ 1.52
UPF1-209ENST00000600310 CHRNA5P30532 468 aa24.52■■□□□ 1.52
UPF1-209ENST00000600310 C2CD5Q86YS7 1000 aa24.52■■□□□ 1.52
UPF1-209ENST00000600310 SRCIN1Q9C0H9 1055 aa24.52■■□□□ 1.52
UPF1-209ENST00000600310 H0YIN7 160 aa24.51■■□□□ 1.51
UPF1-209ENST00000600310 H7C1W4 665 aa24.51■■□□□ 1.51
UPF1-209ENST00000600310 KCNA3P22001 575 aa24.51■■□□□ 1.51
UPF1-209ENST00000600310 ZKSCAN2Q63HK3 967 aa24.51■■□□□ 1.51
UPF1-209ENST00000600310 ATF7IPQ6VMQ6 1270 aa24.51■■□□□ 1.51
UPF1-209ENST00000600310 HCLS1P14317 486 aaPredicted RBP24.5■■□□□ 1.51
UPF1-209ENST00000600310 TRIM27P14373 513 aa24.5■■□□□ 1.51
UPF1-209ENST00000600310 RTL5Q5HYW3 569 aaPredicted RBP24.5■■□□□ 1.51
UPF1-209ENST00000600310 NLRP3Q96P20 1036 aa24.5■■□□□ 1.51
UPF1-209ENST00000600310 ANKRD31Q8N7Z5 1873 aa24.49■■□□□ 1.51
UPF1-209ENST00000600310 IRS4O14654 1257 aaPredicted RBP24.49■■□□□ 1.51
UPF1-209ENST00000600310 SRGNP10124 158 aa24.49■■□□□ 1.51
UPF1-209ENST00000600310 JARID2Q92833 1246 aaPredicted RBP24.49■■□□□ 1.51
UPF1-209ENST00000600310 HSP90B1P14625 803 aaKnown RBP24.48■■□□□ 1.51
UPF1-209ENST00000600310 CCT4P50991 539 aaKnown RBP24.48■■□□□ 1.51
UPF1-209ENST00000600310 CRY2Q49AN0 593 aa24.48■■□□□ 1.51
UPF1-209ENST00000600310 CDHR2Q9BYE9 1310 aa24.48■■□□□ 1.51
UPF1-209ENST00000600310 KIAA1551Q9HCM1 1747 aa24.48■■□□□ 1.51
UPF1-209ENST00000600310 ABCC4O15439 1325 aa24.47■■□□□ 1.51
UPF1-209ENST00000600310 CASP7P55210 303 aa24.47■■□□□ 1.51
UPF1-209ENST00000600310 C3orf67Q6ZVT6 689 aa24.47■■□□□ 1.51
UPF1-209ENST00000600310 UBE3BQ7Z3V4 1068 aa24.47■■□□□ 1.51
UPF1-209ENST00000600310 PIM2Q9P1W9 311 aa24.47■■□□□ 1.51
UPF1-209ENST00000600310 GRM8O00222 908 aa24.46■■□□□ 1.51
UPF1-209ENST00000600310 STYK1Q6J9G0 422 aa24.46■■□□□ 1.51
UPF1-209ENST00000600310 MASTLQ96GX5 879 aa24.46■■□□□ 1.51
UPF1-209ENST00000600310 NPR1P16066 1061 aa24.45■■□□□ 1.5
UPF1-209ENST00000600310 INTS3Q68E01 1043 aaKnown RBP24.45■■□□□ 1.5
UPF1-209ENST00000600310 TNNQ9UQP3 1299 aa24.45■■□□□ 1.5
UPF1-209ENST00000600310 TNRC6CQ9HCJ0 1690 aaKnown RBP24.44■■□□□ 1.5
UPF1-209ENST00000600310 PDE8AO60658 829 aa24.44■■□□□ 1.5
UPF1-209ENST00000600310 SF3B3Q15393 1217 aaKnown RBP24.44■■□□□ 1.5
UPF1-209ENST00000600310 ZNF622Q969S3 477 aaKnown RBP eCLIP24.44■■□□□ 1.5
UPF1-209ENST00000600310 C9orf78Q9NZ63 289 aaPredicted RBP24.44■■□□□ 1.5
UPF1-209ENST00000600310 UTYO14607 1347 aa24.43■■□□□ 1.5
UPF1-209ENST00000600310 HOXA10P31260 410 aaPredicted RBP24.43■■□□□ 1.5
UPF1-209ENST00000600310 CLUAP1Q96AJ1 413 aa24.43■■□□□ 1.5
UPF1-209ENST00000600310 PLA2G12BQ9BX93 195 aa24.43■■□□□ 1.5
UPF1-209ENST00000600310 N4BP2Q86UW6 1770 aaPredicted RBP24.43■■□□□ 1.5
UPF1-209ENST00000600310 TTLL6Q8N841 843 aa24.42■■□□□ 1.5
UPF1-209ENST00000600310 RPGRQ92834 1020 aaKnown RBP24.42■■□□□ 1.5
UPF1-209ENST00000600310 CNKSR1Q969H4 720 aa24.42■■□□□ 1.5
UPF1-209ENST00000600310 DALRD3Q5D0E6 543 aaKnown RBP24.41■■□□□ 1.5
UPF1-209ENST00000600310 DZIP1LQ8IYY4 767 aaKnown RBP24.41■■□□□ 1.5
UPF1-209ENST00000600310 USP44Q9H0E7 712 aa24.41■■□□□ 1.5
UPF1-209ENST00000600310 WWC3Q9ULE0 1092 aa24.41■■□□□ 1.5
UPF1-209ENST00000600310 NBPF7P0C2Y1 421 aaPredicted RBP24.4■■□□□ 1.5
UPF1-209ENST00000600310 RBM17Q96I25 401 aaKnown RBP24.4■■□□□ 1.5
UPF1-209ENST00000600310 CRAMP1Q96RY5 1269 aa24.4■■□□□ 1.5
UPF1-209ENST00000600310 COL11A2P13942 1736 aaPredicted RBP24.4■■□□□ 1.5
UPF1-209ENST00000600310 UTRNP46939 3433 aa24.4■■□□□ 1.5
UPF1-209ENST00000600310 DDX60Q8IY21 1712 aaKnown RBP24.39■■□□□ 1.5
UPF1-209ENST00000600310 ALDH1B1P30837 517 aa24.39■■□□□ 1.49
UPF1-209ENST00000600310 FTSJ3Q8IY81 847 aaKnown RBP24.39■■□□□ 1.49
UPF1-209ENST00000600310 BCS1LQ9Y276 419 aa24.39■■□□□ 1.49
UPF1-209ENST00000600310 MS4A1P11836 297 aa24.38■■□□□ 1.49
UPF1-209ENST00000600310 YBX3P16989 372 aaKnown RBP eCLIP24.38■■□□□ 1.49
UPF1-209ENST00000600310 CTSWP56202 376 aa24.38■■□□□ 1.49
UPF1-209ENST00000600310 TMEM57Q8N5G2 664 aa24.38■■□□□ 1.49
UPF1-209ENST00000600310 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.38■■□□□ 1.49
UPF1-209ENST00000600310 DLEC1Q9Y238 1755 aa24.38■■□□□ 1.49
UPF1-209ENST00000600310 RLBP1P12271 317 aa24.37■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms