RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SUSD4Q5VX71 490 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 LDHDQ86WU2 507 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 JDP2Q8WYK2 163 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 RUNDC1Q96C34 613 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 ZBTB3Q9H5J0 574 aa17.82■□□□□ 0.44
TRIM28-211ENST00000597968 CHL1O00533 1208 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 WDR43Q15061 677 aaKnown RBP eCLIP17.81■□□□□ 0.44
TRIM28-211ENST00000597968 PNMA8AQ86V59 439 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-211ENST00000597968 NUTM1Q86Y26 1132 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 GPC2Q8N158 579 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 SYNE4Q8N205 404 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 NLRP3Q96P20 1036 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 TMX4Q9H1E5 349 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-211ENST00000597968 ZNF277Q9NRM2 450 aaPredicted RBP17.81■□□□□ 0.44
TRIM28-211ENST00000597968 CREBZFQ9NS37 354 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 CACNA1SQ13698 1873 aa17.81■□□□□ 0.44
TRIM28-211ENST00000597968 HTRA3P83110 453 aa17.8■□□□□ 0.44
TRIM28-211ENST00000597968 DDX10Q13206 875 aaKnown RBP17.8■□□□□ 0.44
TRIM28-211ENST00000597968 UTP14AQ9BVJ6 771 aaKnown RBP17.8■□□□□ 0.44
TRIM28-211ENST00000597968 TAF1DQ9H5J8 278 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-211ENST00000597968 EIF2S2P20042 333 aaKnown RBP17.79■□□□□ 0.44
TRIM28-211ENST00000597968 GPTP24298 496 aa17.79■□□□□ 0.44
TRIM28-211ENST00000597968 DDX21Q9NR30 783 aaKnown RBP eCLIP17.79■□□□□ 0.44
TRIM28-211ENST00000597968 HACL1Q9UJ83 578 aa17.79■□□□□ 0.44
TRIM28-211ENST00000597968 PPEF1O14829 653 aaPredicted RBP17.77■□□□□ 0.44
TRIM28-211ENST00000597968 PASKQ96RG2 1323 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 BBOX1O75936 387 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 EIF6P56537 245 aaKnown RBP17.76■□□□□ 0.43
TRIM28-211ENST00000597968 TCIRG1Q13488 830 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 COPS6Q7L5N1 327 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 CFAP44Q96MT7 982 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 TRIM35Q9UPQ4 493 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 ATP6V0A2Q9Y487 856 aa17.76■□□□□ 0.43
TRIM28-211ENST00000597968 ZNF541Q9H0D2 1346 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 EPHX2P34913 555 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 OLFM4Q6UX06 510 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 TMC4Q7Z404 712 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 SUPT20HQ8NEM7 779 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 CHMP4AQ9BY43 222 aa17.75■□□□□ 0.43
TRIM28-211ENST00000597968 DBF4Q9UBU7 674 aaPredicted RBP17.75■□□□□ 0.43
TRIM28-211ENST00000597968 CALD1Q05682 793 aaKnown RBP17.74■□□□□ 0.43
TRIM28-211ENST00000597968 PROSER3Q2NL68 480 aa17.74■□□□□ 0.43
TRIM28-211ENST00000597968 NLRP10Q86W26 655 aa17.74■□□□□ 0.43
TRIM28-211ENST00000597968 PRKRIP1Q9H875 184 aaPredicted RBP17.74■□□□□ 0.43
TRIM28-211ENST00000597968 ADAMTS8Q9UP79 889 aa17.74■□□□□ 0.43
TRIM28-211ENST00000597968 POTEIP0CG38 1075 aa17.73■□□□□ 0.43
TRIM28-211ENST00000597968 POTEJP0CG39 1038 aa17.73■□□□□ 0.43
TRIM28-211ENST00000597968 NEUROD2Q15784 382 aa17.73■□□□□ 0.43
TRIM28-211ENST00000597968 XAGE3Q8WTP9 111 aa17.73■□□□□ 0.43
TRIM28-211ENST00000597968 RTFDC1Q9BY42 306 aaPredicted RBP17.73■□□□□ 0.43
TRIM28-211ENST00000597968 SH3TC1Q8TE82 1336 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 ITGBL1O95965 494 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-211ENST00000597968 LMOD1P29536 600 aaPredicted RBP17.72■□□□□ 0.43
TRIM28-211ENST00000597968 HDGFL1Q5TGJ6 251 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 SP8Q8IXZ3 490 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 CCDC146Q8IYE0 955 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 LARGE2Q8N3Y3 721 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 PLBD2Q8NHP8 589 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 HYPKQ9NX55 129 aa17.72■□□□□ 0.43
TRIM28-211ENST00000597968 TMEM88BA6NKF7 163 aa17.71■□□□□ 0.43
TRIM28-211ENST00000597968 ANKRD13DQ6ZTN6 518 aa17.71■□□□□ 0.43
TRIM28-211ENST00000597968 TRMT112Q9UI30 125 aaKnown RBP17.71■□□□□ 0.43
TRIM28-211ENST00000597968 ADAMTSL1Q8N6G6 1762 aa17.71■□□□□ 0.43
TRIM28-211ENST00000597968 ABCC4O15439 1325 aa17.71■□□□□ 0.42
TRIM28-211ENST00000597968 CNTNAP1P78357 1384 aa17.7■□□□□ 0.42
TRIM28-211ENST00000597968 ANXA1P04083 346 aa17.7■□□□□ 0.42
TRIM28-211ENST00000597968 AIMP1Q12904 312 aaKnown RBP17.7■□□□□ 0.42
TRIM28-211ENST00000597968 TRIM28Q13263 835 aaKnown RBP17.7■□□□□ 0.42
TRIM28-211ENST00000597968 EAPPQ56P03 285 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-211ENST00000597968 USP50Q70EL3 339 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-211ENST00000597968 DDX46Q7L014 1031 aaKnown RBP17.7■□□□□ 0.42
TRIM28-211ENST00000597968 NIM1KQ8IY84 436 aa17.7■□□□□ 0.42
TRIM28-211ENST00000597968 ANKRD36CQ5JPF3 1778 aa17.7■□□□□ 0.42
TRIM28-211ENST00000597968 HSP90B1P14625 803 aaKnown RBP17.69■□□□□ 0.42
TRIM28-211ENST00000597968 GRAPQ13588 217 aa17.69■□□□□ 0.42
TRIM28-211ENST00000597968 C3orf67Q6ZVT6 689 aa17.69■□□□□ 0.42
TRIM28-211ENST00000597968 GRAPLQ8TC17 118 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-211ENST00000597968 CHPF2Q9P2E5 772 aa17.69■□□□□ 0.42
TRIM28-211ENST00000597968 CLEC11AQ9Y240 323 aa17.69■□□□□ 0.42
TRIM28-211ENST00000597968 LAS1LQ9Y4W2 734 aaKnown RBP17.69■□□□□ 0.42
TRIM28-211ENST00000597968 CDHR2Q9BYE9 1310 aa17.69■□□□□ 0.42
TRIM28-211ENST00000597968 PPIP5K2O43314 1243 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 ZNF853P0CG23 659 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 HSPA1AP0DMV8 641 aaKnown RBP17.68■□□□□ 0.42
TRIM28-211ENST00000597968 HSPA1BP0DMV9 641 aaKnown RBP17.68■□□□□ 0.42
TRIM28-211ENST00000597968 GNAI1P63096 354 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 CNTROBQ8N137 903 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 ISCA1Q9BUE6 129 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 IFT57Q9NWB7 429 aa17.68■□□□□ 0.42
TRIM28-211ENST00000597968 SCNN1DP51172 638 aa17.67■□□□□ 0.42
TRIM28-211ENST00000597968 KIAA2012Q0VF49 1180 aa17.67■□□□□ 0.42
TRIM28-211ENST00000597968 SF3B3Q15393 1217 aaKnown RBP17.67■□□□□ 0.42
TRIM28-211ENST00000597968 DPP8Q6V1X1 898 aaPredicted RBP17.67■□□□□ 0.42
TRIM28-211ENST00000597968 NECTIN2Q92692 538 aa17.67■□□□□ 0.42
TRIM28-211ENST00000597968 ZNRF3Q9ULT6 936 aa17.67■□□□□ 0.42
TRIM28-211ENST00000597968 GJA3Q9Y6H8 435 aa17.67■□□□□ 0.42
TRIM28-211ENST00000597968 COL13A1Q5TAT6 717 aaPredicted RBP17.66■□□□□ 0.42
TRIM28-211ENST00000597968 DUSP27Q5VZP5 1158 aa17.66■□□□□ 0.42
TRIM28-211ENST00000597968 MPNDQ8N594 471 aa17.66■□□□□ 0.42
TRIM28-211ENST00000597968 COL4A5P29400 1685 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms