RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CNKSR1	Q969H4	720 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	MASTL	Q96GX5	879 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	UTP14A	Q9BVJ6	771 aa	Known RBP	11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	MYH16	Q9H6N6	1097 aa		11.84	□□□□□ -0.51
DNMT1-223	ENST00000591239	COL11A2	P13942	1736 aa	Predicted RBP	11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	ABCC12	Q96J65	1359 aa		11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	TCERG1	O14776	1098 aa	Known RBP	11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	EXOSC9	Q06265	439 aa	Known RBP	11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	RIC3	Q7Z5B4	369 aa		11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	STK31	Q9BXU1	1019 aa		11.83	□□□□□ -0.52
DNMT1-223	ENST00000591239	VAMP4	O75379	141 aa		11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	CRY2	Q49AN0	593 aa		11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	PRPF40B	Q6NWY9	871 aa	Known RBP	11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	ZNF219	Q9P2Y4	722 aa	Predicted RBP	11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	TRMT112	Q9UI30	125 aa	Known RBP	11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	RNF123	Q5XPI4	1314 aa		11.82	□□□□□ -0.52
DNMT1-223	ENST00000591239	RIC1	Q4ADV7	1423 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	ATP5J2-PTCD1	G3V325	749 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	C21orf2	O43822	256 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	DDX58	O95786	925 aa	Known RBP	11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	SLC4A2	P04920	1241 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	TRIM28	Q13263	835 aa	Known RBP	11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	SLC10A5	Q5PT55	438 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	SYNE4	Q8N205	404 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	ISCA1	Q9BUE6	129 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	ANKRD36C	Q5JPF3	1778 aa		11.81	□□□□□ -0.52
DNMT1-223	ENST00000591239	ADCY9	O60503	1353 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	ALDH1B1	P30837	517 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	RPGR	Q92834	1020 aa	Known RBP	11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	ZNF428	Q96B54	188 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	NLRP3	Q96P20	1036 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	SLX4	Q8IY92	1834 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	SH3TC1	Q8TE82	1336 aa		11.8	□□□□□ -0.52
DNMT1-223	ENST00000591239	PI4KAP2	A4QPH2	592 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239		E9PSI1	815 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	HCLS1	P14317	486 aa	Predicted RBP	11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	HOXA10	P31260	410 aa	Predicted RBP	11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	RASSF7	Q02833	373 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	C9orf131	Q5VYM1	1079 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	C3orf67	Q6ZVT6	689 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	G2E3	Q7L622	706 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	PI4KAP1	Q8N8J0	262 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	C7orf43	Q8WVR3	580 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	MYD88	Q99836	296 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	METTL22	Q9BUU2	404 aa	Predicted RBP	11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	MAP3K2	Q9Y2U5	619 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	ARFGEF2	Q9Y6D5	1785 aa		11.79	□□□□□ -0.52
DNMT1-223	ENST00000591239	NFKBIE	O00221	500 aa		11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	SOGA3	Q5TF21	947 aa		11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	KSR2	Q6VAB6	950 aa		11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	FAM89A	Q96GI7	184 aa		11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	RBM17	Q96I25	401 aa	Known RBP	11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	RNF181	Q9P0P0	153 aa		11.78	□□□□□ -0.52
DNMT1-223	ENST00000591239	CACNA1S	Q13698	1873 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	LMNB1	P20700	586 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	SLFN5	Q08AF3	891 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	FLII	Q13045	1269 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	RTL5	Q5HYW3	569 aa	Predicted RBP	11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	CCDC191	Q8NCU4	936 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	CRAMP1	Q96RY5	1269 aa		11.77	□□□□□ -0.53
DNMT1-223	ENST00000591239	SBF1	O95248	1867 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	PRELP	P51888	382 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	NEXN	Q0ZGT2	675 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	FKBP5	Q13451	457 aa	Predicted RBP	11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	CCDC93	Q567U6	631 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	OLFM4	Q6UX06	510 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	ZNF526	Q8TF50	670 aa	Predicted RBP	11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	CDCA7L	Q96GN5	454 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	CWC25	Q9NXE8	425 aa	Predicted RBP	11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	LTBP3	Q9NS15	1303 aa		11.76	□□□□□ -0.53
DNMT1-223	ENST00000591239	FER1L6	Q2WGJ9	1857 aa		11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	IRS4	O14654	1257 aa	Predicted RBP	11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	IGKV5-2	P06315	115 aa		11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	TAOK3	Q9H2K8	898 aa		11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	GPBP1L1	Q9HC44	474 aa	Predicted RBP	11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	CACNA1F	O60840	1977 aa		11.75	□□□□□ -0.53
DNMT1-223	ENST00000591239	PPEF1	O14829	653 aa	Predicted RBP	11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	PCCA	P05165	728 aa	Predicted RBP	11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	DDX46	Q7L014	1031 aa	Known RBP	11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	TRMT2A	Q8IZ69	625 aa	Known RBP	11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	RTKN2	Q8IZC4	609 aa		11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	DNAAF4	Q8WXU2	420 aa		11.74	□□□□□ -0.53
DNMT1-223	ENST00000591239	NEURL1B	A8MQ27	555 aa		11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	ABCC4	O15439	1325 aa		11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	BBOX1	O75936	387 aa		11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	HSP90B1	P14625	803 aa	Known RBP	11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	LAMB2	P55268	1798 aa		11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	SF3B3	Q15393	1217 aa	Known RBP	11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	CWF19L2	Q2TBE0	894 aa	Known RBP	11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	CC2D2B	Q6DHV5	1058 aa		11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	JARID2	Q92833	1246 aa	Predicted RBP	11.73	□□□□□ -0.53
DNMT1-223	ENST00000591239	DDX60	Q8IY21	1712 aa	Known RBP	11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239		F6X3S4	739 aa		11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	GRIPAP1	Q4V328	841 aa		11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	SLC51A	Q86UW1	340 aa		11.72	□□□□□ -0.53
DNMT1-223	ENST00000591239	LINS1	Q8NG48	757 aa		11.72	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 85.1 ms