RNA–Protein interactions for RNA: ENST00000584083.5

SS18-224, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 663 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-224ENST00000584083 NFKBIEO00221 500 aa26.38■■□□□ 1.81
SS18-224ENST00000584083 SOGA3Q5TF21 947 aa26.38■■□□□ 1.81
SS18-224ENST00000584083 ALDH1B1P30837 517 aa26.37■■□□□ 1.81
SS18-224ENST00000584083 C1QTNF8P60827 252 aa26.37■■□□□ 1.81
SS18-224ENST00000584083 CCDC30Q5VVM6 783 aa26.37■■□□□ 1.81
SS18-224ENST00000584083 NLRP10Q86W26 655 aa26.37■■□□□ 1.81
SS18-224ENST00000584083 TSPYL6Q8N831 410 aa26.37■■□□□ 1.81
SS18-224ENST00000584083 RPGRQ92834 1020 aaKnown RBP26.37■■□□□ 1.81
SS18-224ENST00000584083 RIC1Q4ADV7 1423 aa26.36■■□□□ 1.81
SS18-224ENST00000584083 PRELPP51888 382 aa26.35■■□□□ 1.81
SS18-224ENST00000584083 CRY2Q49AN0 593 aa26.35■■□□□ 1.81
SS18-224ENST00000584083 WDR63Q8IWG1 891 aa26.35■■□□□ 1.81
SS18-224ENST00000584083 GOLGA2Q08379 1002 aa26.34■■□□□ 1.81
SS18-224ENST00000584083 RIC3Q7Z5B4 369 aa26.34■■□□□ 1.81
SS18-224ENST00000584083 NLRP3Q96P20 1036 aa26.34■■□□□ 1.81
SS18-224ENST00000584083 TAOK3Q9H2K8 898 aa26.34■■□□□ 1.81
SS18-224ENST00000584083 PHAXQ9H814 394 aaKnown RBP26.34■■□□□ 1.81
SS18-224ENST00000584083 TRMT112Q9UI30 125 aaKnown RBP26.34■■□□□ 1.81
SS18-224ENST00000584083 CCDC93Q567U6 631 aa26.33■■□□□ 1.81
SS18-224ENST00000584083 C7orf43Q8WVR3 580 aa26.33■■□□□ 1.81
SS18-224ENST00000584083 ZNF428Q96B54 188 aa26.33■■□□□ 1.81
SS18-224ENST00000584083 RNF123Q5XPI4 1314 aa26.33■■□□□ 1.81
SS18-224ENST00000584083 ATP5J2-PTCD1G3V325 749 aa26.32■■□□□ 1.8
SS18-224ENST00000584083 TWISTNBQ3B726 338 aaPredicted RBP26.32■■□□□ 1.8
SS18-224ENST00000584083 SLC10A5Q5PT55 438 aa26.32■■□□□ 1.8
SS18-224ENST00000584083 DICER1Q9UPY3 1922 aaKnown RBP26.31■■□□□ 1.8
SS18-224ENST00000584083 HOXA10P31260 410 aaPredicted RBP26.31■■□□□ 1.8
SS18-224ENST00000584083 C3orf67Q6ZVT6 689 aa26.31■■□□□ 1.8
SS18-224ENST00000584083 RBM17Q96I25 401 aaKnown RBP26.31■■□□□ 1.8
SS18-224ENST00000584083 KDM2BQ8NHM5 1336 aa26.31■■□□□ 1.8
SS18-224ENST00000584083 SH3TC1Q8TE82 1336 aa26.31■■□□□ 1.8
SS18-224ENST00000584083 LTBP3Q9NS15 1303 aa26.31■■□□□ 1.8
SS18-224ENST00000584083 TIAM2Q8IVF5 1701 aa26.31■■□□□ 1.8
SS18-224ENST00000584083 TCERG1O14776 1098 aaKnown RBP26.3■■□□□ 1.8
SS18-224ENST00000584083 SYNE4Q8N205 404 aa26.3■■□□□ 1.8
SS18-224ENST00000584083 ISCA1Q9BUE6 129 aa26.3■■□□□ 1.8
SS18-224ENST00000584083 STK31Q9BXU1 1019 aa26.3■■□□□ 1.8
SS18-224ENST00000584083 FANCIQ9NVI1 1328 aa26.3■■□□□ 1.8
SS18-224ENST00000584083 ZC3H4Q9UPT8 1303 aaKnown RBP26.3■■□□□ 1.8
SS18-224ENST00000584083 HCLS1P14317 486 aaPredicted RBP26.29■■□□□ 1.8
SS18-224ENST00000584083 OLFM4Q6UX06 510 aa26.29■■□□□ 1.8
SS18-224ENST00000584083 NMRK2Q9NPI5 230 aa26.29■■□□□ 1.8
SS18-224ENST00000584083 KIF3CO14782 793 aa26.28■■□□□ 1.8
SS18-224ENST00000584083 DDX58O95786 925 aaKnown RBP26.28■■□□□ 1.8
SS18-224ENST00000584083 CRAMP1Q96RY5 1269 aa26.28■■□□□ 1.8
SS18-224ENST00000584083 LAMB2P55268 1798 aa26.28■■□□□ 1.8
SS18-224ENST00000584083 RTKN2Q8IZC4 609 aa26.27■■□□□ 1.8
SS18-224ENST00000584083 FKBP4Q02790 459 aaKnown RBP eCLIP26.25■■□□□ 1.79
SS18-224ENST00000584083 FAM89AQ96GI7 184 aa26.25■■□□□ 1.79
SS18-224ENST00000584083 MYD88Q99836 296 aa26.25■■□□□ 1.79
SS18-224ENST00000584083 TRIM28Q13263 835 aaKnown RBP26.24■■□□□ 1.79
SS18-224ENST00000584083 CC2D2BQ6DHV5 1058 aa26.24■■□□□ 1.79
SS18-224ENST00000584083 GLTPD2A6NH11 291 aa26.23■■□□□ 1.79
SS18-224ENST00000584083 PPEF1O14829 653 aaPredicted RBP26.23■■□□□ 1.79
SS18-224ENST00000584083 EXOSC9Q06265 439 aaKnown RBP26.23■■□□□ 1.79
SS18-224ENST00000584083 RTL5Q5HYW3 569 aaPredicted RBP26.23■■□□□ 1.79
SS18-224ENST00000584083 MYH16Q9H6N6 1097 aa26.23■■□□□ 1.79
SS18-224ENST00000584083 RRAGCQ9HB90 399 aa26.23■■□□□ 1.79
SS18-224ENST00000584083 CACNA1FO60840 1977 aa26.22■■□□□ 1.79
SS18-224ENST00000584083 SLC4A2P04920 1241 aa26.22■■□□□ 1.79
SS18-224ENST00000584083 C16orf71Q8IYS4 520 aaPredicted RBP26.22■■□□□ 1.79
SS18-224ENST00000584083 TMX4Q9H1E5 349 aaPredicted RBP26.22■■□□□ 1.79
SS18-224ENST00000584083 SPINK5Q9NQ38 1064 aaPredicted RBP26.22■■□□□ 1.79
SS18-224ENST00000584083 ZNF277Q9NRM2 450 aaPredicted RBP26.22■■□□□ 1.79
SS18-224ENST00000584083 DDX60Q8IY21 1712 aaKnown RBP26.22■■□□□ 1.79
SS18-224ENST00000584083 DPY19L2Q6NUT2 758 aa26.21■■□□□ 1.79
SS18-224ENST00000584083 DDX46Q7L014 1031 aaKnown RBP26.21■■□□□ 1.79
SS18-224ENST00000584083 METTL22Q9BUU2 404 aaPredicted RBP26.21■■□□□ 1.79
SS18-224ENST00000584083 MAP3K2Q9Y2U5 619 aa26.21■■□□□ 1.79
SS18-224ENST00000584083 ABCC4O15439 1325 aa26.2■■□□□ 1.79
SS18-224ENST00000584083 KSR2Q6VAB6 950 aa26.2■■□□□ 1.78
SS18-224ENST00000584083 TAF1P21675 1872 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 PI4KAP2A4QPH2 592 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 VAMP4O75379 141 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 G2E3Q7L622 706 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 PI4KAP1Q8N8J0 262 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 CCDC191Q8NCU4 936 aa26.19■■□□□ 1.78
SS18-224ENST00000584083 IRS4O14654 1257 aaPredicted RBP26.18■■□□□ 1.78
SS18-224ENST00000584083 TOMM70O94826 608 aa26.18■■□□□ 1.78
SS18-224ENST00000584083 GRIPAP1Q4V328 841 aa26.18■■□□□ 1.78
SS18-224ENST00000584083 ZBTB38Q8NAP3 1195 aaPredicted RBP26.18■■□□□ 1.78
SS18-224ENST00000584083 CWC25Q9NXE8 425 aaPredicted RBP26.18■■□□□ 1.78
SS18-224ENST00000584083 CCER2I3L3R5 266 aa26.17■■□□□ 1.78
SS18-224ENST00000584083 BBOX1O75936 387 aa26.17■■□□□ 1.78
SS18-224ENST00000584083 IARSP41252 1262 aaKnown RBP26.17■■□□□ 1.78
SS18-224ENST00000584083 PSMD1Q99460 953 aa26.17■■□□□ 1.78
SS18-224ENST00000584083 ATP6V0A2Q9Y487 856 aa26.17■■□□□ 1.78
SS18-224ENST00000584083 NEXNQ0ZGT2 675 aa26.16■■□□□ 1.78
SS18-224ENST00000584083 HSP90B1P14625 803 aaKnown RBP26.15■■□□□ 1.78
SS18-224ENST00000584083 VEGFAP15692 232 aaPredicted RBP26.15■■□□□ 1.78
SS18-224ENST00000584083 GRAPQ13588 217 aa26.15■■□□□ 1.78
SS18-224ENST00000584083 SLC51AQ86UW1 340 aa26.15■■□□□ 1.78
SS18-224ENST00000584083 GRAPLQ8TC17 118 aaPredicted RBP26.15■■□□□ 1.78
SS18-224ENST00000584083 ZNF521Q96K83 1311 aa26.14■■□□□ 1.78
SS18-224ENST00000584083 SNED1Q8TER0 1413 aa26.14■■□□□ 1.78
SS18-224ENST00000584083 FLIIQ13045 1269 aa26.14■■□□□ 1.78
SS18-224ENST00000584083 SF3B3Q15393 1217 aaKnown RBP26.14■■□□□ 1.78
SS18-224ENST00000584083 JARID2Q92833 1246 aaPredicted RBP26.14■■□□□ 1.78
SS18-224ENST00000584083 PCCAP05165 728 aaPredicted RBP26.13■■□□□ 1.77
SS18-224ENST00000584083 FKBP5Q13451 457 aaPredicted RBP26.13■■□□□ 1.77
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms