RNA–Protein interactions for RNA: ENST00000583927.1

SKA2-208, Transcript of spindle and kinetochore associated complex subunit 2, humanhuman

TSL 2

Gene SKA2, Length 533 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA2-208ENST00000583927 NFKBIEO00221 500 aa12.81□□□□□ -0.36
SKA2-208ENST00000583927 GPTP24298 496 aa12.81□□□□□ -0.36
SKA2-208ENST00000583927 ANKRD13DQ6ZTN6 518 aa12.81□□□□□ -0.36
SKA2-208ENST00000583927 NECTIN2Q92692 538 aa12.81□□□□□ -0.36
SKA2-208ENST00000583927 MYH3P11055 1940 aa12.81□□□□□ -0.36
SKA2-208ENST00000583927 C1QTNF8P60827 252 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 TRIM28Q13263 835 aaKnown RBP12.8□□□□□ -0.36
SKA2-208ENST00000583927 ERFEQ4G0M1 354 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 CCDC30Q5VVM6 783 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 NUTM1Q86Y26 1132 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 C8orf58Q8NAV2 365 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 UTP14AQ9BVJ6 771 aaKnown RBP12.8□□□□□ -0.36
SKA2-208ENST00000583927 RNF181Q9P0P0 153 aa12.8□□□□□ -0.36
SKA2-208ENST00000583927 SNED1Q8TER0 1413 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 TAF1P21675 1872 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 FAM177BA6PVY3 158 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 C21orf2O43822 256 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 AIMP1Q12904 312 aaKnown RBP12.79□□□□□ -0.36
SKA2-208ENST00000583927 NLRP10Q86W26 655 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 ISCA1Q9BUE6 129 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 WDR90Q96KV7 1748 aa12.79□□□□□ -0.36
SKA2-208ENST00000583927 PRELPP51888 382 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 RASSF7Q02833 373 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 GRIPAP1Q4V328 841 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 CC2D2BQ6DHV5 1058 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 NLRP3Q96P20 1036 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 CRAMP1Q96RY5 1269 aa12.78□□□□□ -0.36
SKA2-208ENST00000583927 SCN4AP35499 1836 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 KIF3CO14782 793 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 CCDC93Q567U6 631 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 RTKN2Q8IZC4 609 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 TSPYL6Q8N831 410 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 TAOK3Q9H2K8 898 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 KDM2BQ8NHM5 1336 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 SH3TC1Q8TE82 1336 aa12.77□□□□□ -0.37
SKA2-208ENST00000583927 LRRC37AA6NMS7 1700 aa12.76□□□□□ -0.37
SKA2-208ENST00000583927 ELL2O00472 640 aaPredicted RBP12.76□□□□□ -0.37
SKA2-208ENST00000583927 TWISTNBQ3B726 338 aaPredicted RBP12.76□□□□□ -0.37
SKA2-208ENST00000583927 RPGRQ92834 1020 aaKnown RBP12.76□□□□□ -0.37
SKA2-208ENST00000583927 TSR2Q969E8 191 aaKnown RBP12.76□□□□□ -0.37
SKA2-208ENST00000583927 RBM17Q96I25 401 aaKnown RBP12.76□□□□□ -0.37
SKA2-208ENST00000583927 GLTPD2A6NH11 291 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 DDX58O95786 925 aaKnown RBP12.75□□□□□ -0.37
SKA2-208ENST00000583927 FKBP4Q02790 459 aaKnown RBP eCLIP12.75□□□□□ -0.37
SKA2-208ENST00000583927 GOLGA2Q08379 1002 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 ZNF521Q96K83 1311 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 PSMD1Q99460 953 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 PHAXQ9H814 394 aaKnown RBP12.75□□□□□ -0.37
SKA2-208ENST00000583927 FANCIQ9NVI1 1328 aa12.75□□□□□ -0.37
SKA2-208ENST00000583927 TRMT112Q9UI30 125 aaKnown RBP12.75□□□□□ -0.37
SKA2-208ENST00000583927 CCER2I3L3R5 266 aa12.74□□□□□ -0.37
SKA2-208ENST00000583927 RIC3Q7Z5B4 369 aa12.74□□□□□ -0.37
SKA2-208ENST00000583927 CCDC191Q8NCU4 936 aa12.74□□□□□ -0.37
SKA2-208ENST00000583927 ZNF526Q8TF50 670 aaPredicted RBP12.74□□□□□ -0.37
SKA2-208ENST00000583927 STK31Q9BXU1 1019 aa12.74□□□□□ -0.37
SKA2-208ENST00000583927 TOMM70O94826 608 aa12.73□□□□□ -0.37
SKA2-208ENST00000583927 HSP90B1P14625 803 aaKnown RBP12.73□□□□□ -0.37
SKA2-208ENST00000583927 C3orf67Q6ZVT6 689 aa12.73□□□□□ -0.37
SKA2-208ENST00000583927 METTL22Q9BUU2 404 aaPredicted RBP12.73□□□□□ -0.37
SKA2-208ENST00000583927 ZNF219Q9P2Y4 722 aaPredicted RBP12.73□□□□□ -0.37
SKA2-208ENST00000583927 VAMP4O75379 141 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 BBOX1O75936 387 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 SF3B3Q15393 1217 aaKnown RBP12.72□□□□□ -0.37
SKA2-208ENST00000583927 DPY19L2Q6NUT2 758 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 KSR2Q6VAB6 950 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 TMC4Q7Z404 712 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 ZBTB38Q8NAP3 1195 aaPredicted RBP12.72□□□□□ -0.37
SKA2-208ENST00000583927 VPS33BQ9H267 617 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 MYH16Q9H6N6 1097 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 NMRK2Q9NPI5 230 aa12.72□□□□□ -0.37
SKA2-208ENST00000583927 LTBP1Q14766 1721 aa12.71□□□□□ -0.37
SKA2-208ENST00000583927 ABCC4O15439 1325 aa12.71□□□□□ -0.37
SKA2-208ENST00000583927 ATP5J2-PTCD1G3V325 749 aa12.71□□□□□ -0.37
SKA2-208ENST00000583927 PPEF1O14829 653 aaPredicted RBP12.71□□□□□ -0.37
SKA2-208ENST00000583927 HCLS1P14317 486 aaPredicted RBP12.71□□□□□ -0.37
SKA2-208ENST00000583927 SYNE4Q8N205 404 aa12.71□□□□□ -0.37
SKA2-208ENST00000583927 RBM46Q8TBY0 533 aaKnown RBP12.71□□□□□ -0.37
SKA2-208ENST00000583927 ATP6V0A2Q9Y487 856 aa12.71□□□□□ -0.37
SKA2-208ENST00000583927 SLC4A2P04920 1241 aa12.7□□□□□ -0.38
SKA2-208ENST00000583927 PCCAP05165 728 aaPredicted RBP12.7□□□□□ -0.38
SKA2-208ENST00000583927 VEGFAP15692 232 aaPredicted RBP12.7□□□□□ -0.38
SKA2-208ENST00000583927 DDX46Q7L014 1031 aaKnown RBP12.7□□□□□ -0.38
SKA2-208ENST00000583927 SP8Q8IXZ3 490 aa12.7□□□□□ -0.38
SKA2-208ENST00000583927 FAM89AQ96GI7 184 aa12.7□□□□□ -0.38
SKA2-208ENST00000583927 SPINK5Q9NQ38 1064 aaPredicted RBP12.7□□□□□ -0.38
SKA2-208ENST00000583927 SENP3-EIF4A1A0A087X0R7 540 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 PI4KAP2A4QPH2 592 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 FZD9O00144 591 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 IARSP41252 1262 aaKnown RBP12.69□□□□□ -0.38
SKA2-208ENST00000583927 EXOSC9Q06265 439 aaKnown RBP12.69□□□□□ -0.38
SKA2-208ENST00000583927 GRAPQ13588 217 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 OLFM4Q6UX06 510 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 PI4KAP1Q8N8J0 262 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 GRAPLQ8TC17 118 aaPredicted RBP12.69□□□□□ -0.38
SKA2-208ENST00000583927 MYD88Q99836 296 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 RTFDC1Q9BY42 306 aaPredicted RBP12.69□□□□□ -0.38
SKA2-208ENST00000583927 CWC25Q9NXE8 425 aaPredicted RBP12.69□□□□□ -0.38
SKA2-208ENST00000583927 MAP3K2Q9Y2U5 619 aa12.69□□□□□ -0.38
SKA2-208ENST00000583927 SALL2Q9Y467 1007 aaPredicted RBP12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms