RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 NFKBIEO00221 500 aa30.85■■■□□ 2.53
SHMT1-206ENST00000579558 CCDC30Q5VVM6 783 aa30.85■■■□□ 2.53
SHMT1-206ENST00000579558 NLRP10Q86W26 655 aa30.85■■■□□ 2.53
SHMT1-206ENST00000579558 WDR63Q8IWG1 891 aa30.85■■■□□ 2.53
SHMT1-206ENST00000579558 CRY2Q49AN0 593 aa30.84■■■□□ 2.53
SHMT1-206ENST00000579558 LMNB1P20700 586 aa30.83■■■□□ 2.53
SHMT1-206ENST00000579558 PHAXQ9H814 394 aaKnown RBP30.83■■■□□ 2.53
SHMT1-206ENST00000579558 FER1L6Q2WGJ9 1857 aa30.82■■■□□ 2.53
SHMT1-206ENST00000579558 RNF123Q5XPI4 1314 aa30.82■■■□□ 2.52
SHMT1-206ENST00000579558 GOLGA2Q08379 1002 aa30.82■■■□□ 2.52
SHMT1-206ENST00000579558 SOGA3Q5TF21 947 aa30.82■■■□□ 2.52
SHMT1-206ENST00000579558 FANCIQ9NVI1 1328 aa30.81■■■□□ 2.52
SHMT1-206ENST00000579558 ALDH1B1P30837 517 aa30.81■■■□□ 2.52
SHMT1-206ENST00000579558 TWISTNBQ3B726 338 aaPredicted RBP30.81■■■□□ 2.52
SHMT1-206ENST00000579558 RPGRQ92834 1020 aaKnown RBP30.81■■■□□ 2.52
SHMT1-206ENST00000579558 PRELPP51888 382 aa30.8■■■□□ 2.52
SHMT1-206ENST00000579558 CCDC88AQ3V6T2 1871 aa30.8■■■□□ 2.52
SHMT1-206ENST00000579558 RIC3Q7Z5B4 369 aa30.79■■■□□ 2.52
SHMT1-206ENST00000579558 C7orf43Q8WVR3 580 aa30.79■■■□□ 2.52
SHMT1-206ENST00000579558 TRMT112Q9UI30 125 aaKnown RBP30.79■■■□□ 2.52
SHMT1-206ENST00000579558 SLC10A5Q5PT55 438 aa30.78■■■□□ 2.52
SHMT1-206ENST00000579558 NLRP3Q96P20 1036 aa30.78■■■□□ 2.52
SHMT1-206ENST00000579558 ISCA1Q9BUE6 129 aa30.78■■■□□ 2.52
SHMT1-206ENST00000579558 TAOK3Q9H2K8 898 aa30.78■■■□□ 2.52
SHMT1-206ENST00000579558 ATP5J2-PTCD1G3V325 749 aa30.77■■■□□ 2.52
SHMT1-206ENST00000579558 CCDC93Q567U6 631 aa30.77■■■□□ 2.52
SHMT1-206ENST00000579558 C3orf67Q6ZVT6 689 aa30.77■■■□□ 2.52
SHMT1-206ENST00000579558 STK31Q9BXU1 1019 aa30.77■■■□□ 2.52
SHMT1-206ENST00000579558 SH3TC1Q8TE82 1336 aa30.76■■■□□ 2.52
SHMT1-206ENST00000579558 LTBP3Q9NS15 1303 aa30.76■■■□□ 2.52
SHMT1-206ENST00000579558 HOXA10P31260 410 aaPredicted RBP30.76■■■□□ 2.51
SHMT1-206ENST00000579558 ZNF428Q96B54 188 aa30.76■■■□□ 2.51
SHMT1-206ENST00000579558 TCERG1O14776 1098 aaKnown RBP30.75■■■□□ 2.51
SHMT1-206ENST00000579558 RBM17Q96I25 401 aaKnown RBP30.75■■■□□ 2.51
SHMT1-206ENST00000579558 TIAM2Q8IVF5 1701 aa30.75■■■□□ 2.51
SHMT1-206ENST00000579558 ZC3H4Q9UPT8 1303 aaKnown RBP30.74■■■□□ 2.51
SHMT1-206ENST00000579558 DDX58O95786 925 aaKnown RBP30.74■■■□□ 2.51
SHMT1-206ENST00000579558 HCLS1P14317 486 aaPredicted RBP30.74■■■□□ 2.51
SHMT1-206ENST00000579558 SYNE4Q8N205 404 aa30.74■■■□□ 2.51
SHMT1-206ENST00000579558 OLFM4Q6UX06 510 aa30.73■■■□□ 2.51
SHMT1-206ENST00000579558 CRAMP1Q96RY5 1269 aa30.73■■■□□ 2.51
SHMT1-206ENST00000579558 SPINK5Q9NQ38 1064 aaPredicted RBP30.73■■■□□ 2.51
SHMT1-206ENST00000579558 LAMB2P55268 1798 aa30.72■■■□□ 2.51
SHMT1-206ENST00000579558 MYH16Q9H6N6 1097 aa30.72■■■□□ 2.51
SHMT1-206ENST00000579558 KDM2BQ8NHM5 1336 aa30.72■■■□□ 2.51
SHMT1-206ENST00000579558 EXOSC9Q06265 439 aaKnown RBP30.71■■■□□ 2.51
SHMT1-206ENST00000579558 TRIM28Q13263 835 aaKnown RBP30.71■■■□□ 2.51
SHMT1-206ENST00000579558 MYD88Q99836 296 aa30.71■■■□□ 2.51
SHMT1-206ENST00000579558 DICER1Q9UPY3 1922 aaKnown RBP30.71■■■□□ 2.51
SHMT1-206ENST00000579558 CCER2I3L3R5 266 aa30.7■■■□□ 2.51
SHMT1-206ENST00000579558 KIF3CO14782 793 aa30.7■■■□□ 2.51
SHMT1-206ENST00000579558 RTKN2Q8IZC4 609 aa30.7■■■□□ 2.51
SHMT1-206ENST00000579558 NMRK2Q9NPI5 230 aa30.7■■■□□ 2.51
SHMT1-206ENST00000579558 FAM89AQ96GI7 184 aa30.69■■■□□ 2.5
SHMT1-206ENST00000579558 SLC4A2P04920 1241 aa30.68■■■□□ 2.5
SHMT1-206ENST00000579558 FKBP4Q02790 459 aaKnown RBP eCLIP30.68■■■□□ 2.5
SHMT1-206ENST00000579558 DDX60Q8IY21 1712 aaKnown RBP30.67■■■□□ 2.5
SHMT1-206ENST00000579558 PPEF1O14829 653 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-206ENST00000579558 VAMP4O75379 141 aa30.67■■■□□ 2.5
SHMT1-206ENST00000579558 METTL22Q9BUU2 404 aaPredicted RBP30.67■■■□□ 2.5
SHMT1-206ENST00000579558 MAP3K2Q9Y2U5 619 aa30.67■■■□□ 2.5
SHMT1-206ENST00000579558 ZNF521Q96K83 1311 aa30.67■■■□□ 2.5
SHMT1-206ENST00000579558 RTL5Q5HYW3 569 aaPredicted RBP30.66■■■□□ 2.5
SHMT1-206ENST00000579558 CC2D2BQ6DHV5 1058 aa30.66■■■□□ 2.5
SHMT1-206ENST00000579558 KSR2Q6VAB6 950 aa30.66■■■□□ 2.5
SHMT1-206ENST00000579558 G2E3Q7L622 706 aa30.65■■■□□ 2.5
SHMT1-206ENST00000579558 ABCC4O15439 1325 aa30.65■■■□□ 2.5
SHMT1-206ENST00000579558 PI4KAP2A4QPH2 592 aa30.64■■■□□ 2.5
SHMT1-206ENST00000579558 PI4KAP1Q8N8J0 262 aa30.64■■■□□ 2.5
SHMT1-206ENST00000579558 CCDC191Q8NCU4 936 aa30.64■■■□□ 2.5
SHMT1-206ENST00000579558 ZNF277Q9NRM2 450 aaPredicted RBP30.64■■■□□ 2.5
SHMT1-206ENST00000579558 SNED1Q8TER0 1413 aa30.64■■■□□ 2.49
SHMT1-206ENST00000579558 GLTPD2A6NH11 291 aa30.63■■■□□ 2.49
SHMT1-206ENST00000579558 DDX46Q7L014 1031 aaKnown RBP30.63■■■□□ 2.49
SHMT1-206ENST00000579558 CACNA1FO60840 1977 aa30.63■■■□□ 2.49
SHMT1-206ENST00000579558 IRS4O14654 1257 aaPredicted RBP30.62■■■□□ 2.49
SHMT1-206ENST00000579558 ZBTB38Q8NAP3 1195 aaPredicted RBP30.62■■■□□ 2.49
SHMT1-206ENST00000579558 CWC25Q9NXE8 425 aaPredicted RBP30.62■■■□□ 2.49
SHMT1-206ENST00000579558 FLIIQ13045 1269 aa30.61■■■□□ 2.49
SHMT1-206ENST00000579558 TMX4Q9H1E5 349 aaPredicted RBP30.61■■■□□ 2.49
SHMT1-206ENST00000579558 RRAGCQ9HB90 399 aa30.61■■■□□ 2.49
SHMT1-206ENST00000579558 GRIPAP1Q4V328 841 aa30.6■■■□□ 2.49
SHMT1-206ENST00000579558 DPY19L2Q6NUT2 758 aa30.6■■■□□ 2.49
SHMT1-206ENST00000579558 SLC51AQ86UW1 340 aa30.6■■■□□ 2.49
SHMT1-206ENST00000579558 PSMD1Q99460 953 aa30.6■■■□□ 2.49
SHMT1-206ENST00000579558 CEP350Q5VT06 3117 aa30.59■■■□□ 2.49
SHMT1-206ENST00000579558 NEXNQ0ZGT2 675 aa30.59■■■□□ 2.49
SHMT1-206ENST00000579558 GRAPQ13588 217 aa30.59■■■□□ 2.49
SHMT1-206ENST00000579558 GRAPLQ8TC17 118 aaPredicted RBP30.59■■■□□ 2.49
SHMT1-206ENST00000579558 ATP6V0A2Q9Y487 856 aa30.59■■■□□ 2.49
SHMT1-206ENST00000579558 BBOX1O75936 387 aa30.58■■■□□ 2.49
SHMT1-206ENST00000579558 PCCAP05165 728 aaPredicted RBP30.58■■■□□ 2.49
SHMT1-206ENST00000579558 IARSP41252 1262 aaKnown RBP30.58■■■□□ 2.49
SHMT1-206ENST00000579558 FKBP5Q13451 457 aaPredicted RBP30.58■■■□□ 2.49
SHMT1-206ENST00000579558 SF3B3Q15393 1217 aaKnown RBP30.58■■■□□ 2.49
SHMT1-206ENST00000579558 IGKV5-2P06315 115 aa30.57■■■□□ 2.48
SHMT1-206ENST00000579558 HSP90B1P14625 803 aaKnown RBP30.57■■■□□ 2.48
SHMT1-206ENST00000579558 C16orf71Q8IYS4 520 aaPredicted RBP30.57■■■□□ 2.48
SHMT1-206ENST00000579558 TAF1P21675 1872 aa30.57■■■□□ 2.48
SHMT1-206ENST00000579558 TOMM70O94826 608 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms