RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 TRMT112Q9UI30 125 aaKnown RBP19.6■□□□□ 0.73
SMG6-220ENST00000576218 RASSF7Q02833 373 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 SOGA3Q5TF21 947 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 C9orf131Q5VYM1 1079 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 NLRP10Q86W26 655 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 ZNF428Q96B54 188 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 RNF181Q9P0P0 153 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 ANKRD36CQ5JPF3 1778 aa19.59■□□□□ 0.73
SMG6-220ENST00000576218 RNF123Q5XPI4 1314 aa19.58■□□□□ 0.73
SMG6-220ENST00000576218 ATP5J2-PTCD1G3V325 749 aa19.58■□□□□ 0.72
SMG6-220ENST00000576218 ALDH1B1P30837 517 aa19.58■□□□□ 0.72
SMG6-220ENST00000576218 EXOSC9Q06265 439 aaKnown RBP19.58■□□□□ 0.72
SMG6-220ENST00000576218 NLRP3Q96P20 1036 aa19.58■□□□□ 0.72
SMG6-220ENST00000576218 GPBP1L1Q9HC44 474 aaPredicted RBP19.57■□□□□ 0.72
SMG6-220ENST00000576218 CACNA1SQ13698 1873 aa19.56■□□□□ 0.72
SMG6-220ENST00000576218 SH3TC1Q8TE82 1336 aa19.56■□□□□ 0.72
SMG6-220ENST00000576218 RBM17Q96I25 401 aaKnown RBP19.56■□□□□ 0.72
SMG6-220ENST00000576218 MYD88Q99836 296 aa19.56■□□□□ 0.72
SMG6-220ENST00000576218 TNRC6CQ9HCJ0 1690 aaKnown RBP19.56■□□□□ 0.72
SMG6-220ENST00000576218 KLRG2A4D1S0 409 aaPredicted RBP19.55■□□□□ 0.72
SMG6-220ENST00000576218 SLC4A2P04920 1241 aa19.55■□□□□ 0.72
SMG6-220ENST00000576218 TMX4Q9H1E5 349 aaPredicted RBP19.55■□□□□ 0.72
SMG6-220ENST00000576218 RIC1Q4ADV7 1423 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 HCLS1P14317 486 aaPredicted RBP19.54■□□□□ 0.72
SMG6-220ENST00000576218 LMNB1P20700 586 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 NEXNQ0ZGT2 675 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 CCDC93Q567U6 631 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 TAOK3Q9H2K8 898 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 SPINK5Q9NQ38 1064 aaPredicted RBP19.54■□□□□ 0.72
SMG6-220ENST00000576218 ARFGEF2Q9Y6D5 1785 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 ADCY9O60503 1353 aa19.54■□□□□ 0.72
SMG6-220ENST00000576218 CRY2Q49AN0 593 aa19.53■□□□□ 0.72
SMG6-220ENST00000576218 RTL5Q5HYW3 569 aaPredicted RBP19.53■□□□□ 0.72
SMG6-220ENST00000576218 ISCA1Q9BUE6 129 aa19.53■□□□□ 0.72
SMG6-220ENST00000576218 MAP3K2Q9Y2U5 619 aa19.53■□□□□ 0.72
SMG6-220ENST00000576218 FKBP5Q13451 457 aaPredicted RBP19.52■□□□□ 0.72
SMG6-220ENST00000576218 MIER1Q8N108 512 aa19.52■□□□□ 0.72
SMG6-220ENST00000576218 SLX4Q8IY92 1834 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 PI4KAP2A4QPH2 592 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 E9PSI1 815 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 VAMP4O75379 141 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 HSP90B1P14625 803 aaKnown RBP19.51■□□□□ 0.71
SMG6-220ENST00000576218 KSR2Q6VAB6 950 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 PI4KAP1Q8N8J0 262 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 FAM89AQ96GI7 184 aa19.51■□□□□ 0.71
SMG6-220ENST00000576218 METTL22Q9BUU2 404 aaPredicted RBP19.51■□□□□ 0.71
SMG6-220ENST00000576218 NFKBIEO00221 500 aa19.5■□□□□ 0.71
SMG6-220ENST00000576218 PPEF1O14829 653 aaPredicted RBP19.5■□□□□ 0.71
SMG6-220ENST00000576218 FLIIQ13045 1269 aa19.5■□□□□ 0.71
SMG6-220ENST00000576218 SLC10A5Q5PT55 438 aa19.5■□□□□ 0.71
SMG6-220ENST00000576218 DDX46Q7L014 1031 aaKnown RBP19.5■□□□□ 0.71
SMG6-220ENST00000576218 CWC25Q9NXE8 425 aaPredicted RBP19.5■□□□□ 0.71
SMG6-220ENST00000576218 ZNF521Q96K83 1311 aa19.5■□□□□ 0.71
SMG6-220ENST00000576218 C3orf67Q6ZVT6 689 aa19.49■□□□□ 0.71
SMG6-220ENST00000576218 RTKN2Q8IZC4 609 aa19.49■□□□□ 0.71
SMG6-220ENST00000576218 SYNE4Q8N205 404 aa19.49■□□□□ 0.71
SMG6-220ENST00000576218 CRAMP1Q96RY5 1269 aa19.49■□□□□ 0.71
SMG6-220ENST00000576218 IRS4O14654 1257 aaPredicted RBP19.48■□□□□ 0.71
SMG6-220ENST00000576218 HOXA10P31260 410 aaPredicted RBP19.48■□□□□ 0.71
SMG6-220ENST00000576218 TRIM28Q13263 835 aaKnown RBP19.48■□□□□ 0.71
SMG6-220ENST00000576218 G2E3Q7L622 706 aa19.48■□□□□ 0.71
SMG6-220ENST00000576218 CCDC191Q8NCU4 936 aa19.48■□□□□ 0.71
SMG6-220ENST00000576218 KDM2BQ8NHM5 1336 aa19.48■□□□□ 0.71
SMG6-220ENST00000576218 ZBTB38Q8NAP3 1195 aaPredicted RBP19.47■□□□□ 0.71
SMG6-220ENST00000576218 LTBP3Q9NS15 1303 aa19.47■□□□□ 0.71
SMG6-220ENST00000576218 FKBP4Q02790 459 aaKnown RBP eCLIP19.46■□□□□ 0.71
SMG6-220ENST00000576218 CC2D2BQ6DHV5 1058 aa19.46■□□□□ 0.71
SMG6-220ENST00000576218 OLFM4Q6UX06 510 aa19.46■□□□□ 0.71
SMG6-220ENST00000576218 ABCC4O15439 1325 aa19.46■□□□□ 0.71
SMG6-220ENST00000576218 ZC3H4Q9UPT8 1303 aaKnown RBP19.46■□□□□ 0.71
SMG6-220ENST00000576218 SBF1O95248 1867 aa19.44■□□□□ 0.7
SMG6-220ENST00000576218 FER1L6Q2WGJ9 1857 aa19.44■□□□□ 0.7
SMG6-220ENST00000576218 PCCAP05165 728 aaPredicted RBP19.44■□□□□ 0.7
SMG6-220ENST00000576218 C16orf71Q8IYS4 520 aaPredicted RBP19.44■□□□□ 0.7
SMG6-220ENST00000576218 C7orf43Q8WVR3 580 aa19.44■□□□□ 0.7
SMG6-220ENST00000576218 DNAAF4Q8WXU2 420 aa19.44■□□□□ 0.7
SMG6-220ENST00000576218 ZNF277Q9NRM2 450 aaPredicted RBP19.44■□□□□ 0.7
SMG6-220ENST00000576218 TIAM2Q8IVF5 1701 aa19.43■□□□□ 0.7
SMG6-220ENST00000576218 GRAPQ13588 217 aa19.43■□□□□ 0.7
SMG6-220ENST00000576218 CWF19L2Q2TBE0 894 aaKnown RBP19.43■□□□□ 0.7
SMG6-220ENST00000576218 GRIPAP1Q4V328 841 aa19.43■□□□□ 0.7
SMG6-220ENST00000576218 DPY19L2Q6NUT2 758 aa19.43■□□□□ 0.7
SMG6-220ENST00000576218 GRAPLQ8TC17 118 aaPredicted RBP19.43■□□□□ 0.7
SMG6-220ENST00000576218 JARID2Q92833 1246 aaPredicted RBP19.43■□□□□ 0.7
SMG6-220ENST00000576218 BBOX1O75936 387 aa19.42■□□□□ 0.7
SMG6-220ENST00000576218 PRELPP51888 382 aa19.42■□□□□ 0.7
SMG6-220ENST00000576218 SLFN5Q08AF3 891 aa19.42■□□□□ 0.7
SMG6-220ENST00000576218 LAMB2P55268 1798 aa19.42■□□□□ 0.7
SMG6-220ENST00000576218 CACNA1FO60840 1977 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 NEURL1BA8MQ27 555 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 CCDC152Q4G0S7 254 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 CDCA7LQ96GN5 454 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 ATP6V0A2Q9Y487 856 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 CCDC88AQ3V6T2 1871 aa19.41■□□□□ 0.7
SMG6-220ENST00000576218 DDX60Q8IY21 1712 aaKnown RBP19.4■□□□□ 0.7
SMG6-220ENST00000576218 PDE8AO60658 829 aa19.4■□□□□ 0.7
SMG6-220ENST00000576218 IGKV5-2P06315 115 aa19.4■□□□□ 0.7
SMG6-220ENST00000576218 IARSP41252 1262 aaKnown RBP19.4■□□□□ 0.7
SMG6-220ENST00000576218 SF3B3Q15393 1217 aaKnown RBP19.4■□□□□ 0.7
SMG6-220ENST00000576218 TMC4Q7Z404 712 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms