RNA–Protein interactions for RNA: ENST00000573895.1

ABR-223, Transcript of ABR, RhoGEF and GTPase activating protein, human

TSL 3

Gene ABR, Length 1,010 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ABR-223	ENST00000573895	TNRC6C	Q9HCJ0	1690 aa	Known RBP	18.5	■□□□□ 0.55
ABR-223	ENST00000573895	ZC3H4	Q9UPT8	1303 aa	Known RBP	18.5	■□□□□ 0.55
ABR-223	ENST00000573895	ERFE	Q4G0M1	354 aa		18.5	■□□□□ 0.55
ABR-223	ENST00000573895	CCDC30	Q5VVM6	783 aa		18.5	■□□□□ 0.55
ABR-223	ENST00000573895	PRPF40B	Q6NWY9	871 aa	Known RBP	18.5	■□□□□ 0.55
ABR-223	ENST00000573895	NUTM1	Q86Y26	1132 aa		18.5	■□□□□ 0.55
ABR-223	ENST00000573895	UTP14A	Q9BVJ6	771 aa	Known RBP	18.5	■□□□□ 0.55
ABR-223	ENST00000573895	GPBP1L1	Q9HC44	474 aa	Predicted RBP	18.5	■□□□□ 0.55
ABR-223	ENST00000573895	ELL2	O00472	640 aa	Predicted RBP	18.49	■□□□□ 0.55
ABR-223	ENST00000573895	LMNB1	P20700	586 aa		18.49	■□□□□ 0.55
ABR-223	ENST00000573895	GOLGA2	Q08379	1002 aa		18.49	■□□□□ 0.55
ABR-223	ENST00000573895	SLC10A5	Q5PT55	438 aa		18.49	■□□□□ 0.55
ABR-223	ENST00000573895	ABCC12	Q96J65	1359 aa		18.49	■□□□□ 0.55
ABR-223	ENST00000573895	LTBP3	Q9NS15	1303 aa		18.49	■□□□□ 0.55
ABR-223	ENST00000573895	SENP3-EIF4A1	A0A087X0R7	540 aa		18.48	■□□□□ 0.55
ABR-223	ENST00000573895	C21orf2	O43822	256 aa		18.48	■□□□□ 0.55
ABR-223	ENST00000573895	HOXA10	P31260	410 aa	Predicted RBP	18.48	■□□□□ 0.55
ABR-223	ENST00000573895	NLRP10	Q86W26	655 aa		18.48	■□□□□ 0.55
ABR-223	ENST00000573895	C7orf43	Q8WVR3	580 aa		18.48	■□□□□ 0.55
ABR-223	ENST00000573895	TSR2	Q969E8	191 aa	Known RBP	18.48	■□□□□ 0.55
ABR-223	ENST00000573895	NFKBIE	O00221	500 aa		18.47	■□□□□ 0.55
ABR-223	ENST00000573895	RNF181	Q9P0P0	153 aa		18.47	■□□□□ 0.55
ABR-223	ENST00000573895	TRIM28	Q13263	835 aa	Known RBP	18.46	■□□□□ 0.55
ABR-223	ENST00000573895	TSPYL6	Q8N831	410 aa		18.46	■□□□□ 0.55
ABR-223	ENST00000573895	NLRP3	Q96P20	1036 aa		18.46	■□□□□ 0.55
ABR-223	ENST00000573895	ISCA1	Q9BUE6	129 aa		18.46	■□□□□ 0.55
ABR-223	ENST00000573895		E9PSI1	815 aa		18.45	■□□□□ 0.54
ABR-223	ENST00000573895	RASSF7	Q02833	373 aa		18.45	■□□□□ 0.54
ABR-223	ENST00000573895	TWISTNB	Q3B726	338 aa	Predicted RBP	18.45	■□□□□ 0.54
ABR-223	ENST00000573895	CCDC93	Q567U6	631 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	RPGR	Q92834	1020 aa	Known RBP	18.44	■□□□□ 0.54
ABR-223	ENST00000573895	CRAMP1	Q96RY5	1269 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	TAOK3	Q9H2K8	898 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	PHAX	Q9H814	394 aa	Known RBP	18.44	■□□□□ 0.54
ABR-223	ENST00000573895	TRMT112	Q9UI30	125 aa	Known RBP	18.44	■□□□□ 0.54
ABR-223	ENST00000573895	LAMB2	P55268	1798 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	SH3TC1	Q8TE82	1336 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	FANCI	Q9NVI1	1328 aa		18.44	■□□□□ 0.54
ABR-223	ENST00000573895	TIAM2	Q8IVF5	1701 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	DDX58	O95786	925 aa	Known RBP	18.43	■□□□□ 0.54
ABR-223	ENST00000573895	PRELP	P51888	382 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	C1QTNF8	P60827	252 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	SLFN5	Q08AF3	891 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	CC2D2B	Q6DHV5	1058 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	RIC3	Q7Z5B4	369 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	RTKN2	Q8IZC4	609 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	RBM17	Q96I25	401 aa	Known RBP	18.43	■□□□□ 0.54
ABR-223	ENST00000573895	STK31	Q9BXU1	1019 aa		18.43	■□□□□ 0.54
ABR-223	ENST00000573895	GRIPAP1	Q4V328	841 aa		18.42	■□□□□ 0.54
ABR-223	ENST00000573895	TRMT2A	Q8IZ69	625 aa	Known RBP	18.42	■□□□□ 0.54
ABR-223	ENST00000573895	ZNF526	Q8TF50	670 aa	Predicted RBP	18.42	■□□□□ 0.54
ABR-223	ENST00000573895	ZNF219	Q9P2Y4	722 aa	Predicted RBP	18.42	■□□□□ 0.54
ABR-223	ENST00000573895	KDM2B	Q8NHM5	1336 aa		18.42	■□□□□ 0.54
ABR-223	ENST00000573895	DDX60	Q8IY21	1712 aa	Known RBP	18.41	■□□□□ 0.54
ABR-223	ENST00000573895	MYH16	Q9H6N6	1097 aa		18.41	■□□□□ 0.54
ABR-223	ENST00000573895	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.4	■□□□□ 0.54
ABR-223	ENST00000573895	ATP5J2-PTCD1	G3V325	749 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	KIF3C	O14782	793 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	VAMP4	O75379	141 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	C3orf67	Q6ZVT6	689 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	CCDC191	Q8NCU4	936 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	CDCA7L	Q96GN5	454 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	METTL22	Q9BUU2	404 aa	Predicted RBP	18.39	■□□□□ 0.53
ABR-223	ENST00000573895	SNED1	Q8TER0	1413 aa		18.39	■□□□□ 0.53
ABR-223	ENST00000573895	GLTPD2	A6NH11	291 aa		18.38	■□□□□ 0.53
ABR-223	ENST00000573895	HSP90B1	P14625	803 aa	Known RBP	18.38	■□□□□ 0.53
ABR-223	ENST00000573895	KSR2	Q6VAB6	950 aa		18.38	■□□□□ 0.53
ABR-223	ENST00000573895	PSMD1	Q99460	953 aa		18.38	■□□□□ 0.53
ABR-223	ENST00000573895	SPINK5	Q9NQ38	1064 aa	Predicted RBP	18.38	■□□□□ 0.53
ABR-223	ENST00000573895	SLC4A2	P04920	1241 aa		18.37	■□□□□ 0.53
ABR-223	ENST00000573895	HCLS1	P14317	486 aa	Predicted RBP	18.37	■□□□□ 0.53
ABR-223	ENST00000573895	EXOSC9	Q06265	439 aa	Known RBP	18.37	■□□□□ 0.53
ABR-223	ENST00000573895	SYNE4	Q8N205	404 aa		18.37	■□□□□ 0.53
ABR-223	ENST00000573895	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	18.37	■□□□□ 0.53
ABR-223	ENST00000573895	ABCC4	O15439	1325 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	BBOX1	O75936	387 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	SF3B3	Q15393	1217 aa	Known RBP	18.36	■□□□□ 0.53
ABR-223	ENST00000573895	DPY19L2	Q6NUT2	758 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	FAM89A	Q96GI7	184 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	MYD88	Q99836	296 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	MAP3K2	Q9Y2U5	619 aa		18.36	■□□□□ 0.53
ABR-223	ENST00000573895	PI4KAP2	A4QPH2	592 aa		18.35	■□□□□ 0.53
ABR-223	ENST00000573895	PPEF1	O14829	653 aa	Predicted RBP	18.35	■□□□□ 0.53
ABR-223	ENST00000573895	OLFM4	Q6UX06	510 aa		18.35	■□□□□ 0.53
ABR-223	ENST00000573895	DDX46	Q7L014	1031 aa	Known RBP	18.35	■□□□□ 0.53
ABR-223	ENST00000573895	PI4KAP1	Q8N8J0	262 aa		18.35	■□□□□ 0.53
ABR-223	ENST00000573895	NMRK2	Q9NPI5	230 aa		18.35	■□□□□ 0.53
ABR-223	ENST00000573895	CWC25	Q9NXE8	425 aa	Predicted RBP	18.35	■□□□□ 0.53
ABR-223	ENST00000573895	TOMM70	O94826	608 aa		18.34	■□□□□ 0.53
ABR-223	ENST00000573895	PCCA	P05165	728 aa	Predicted RBP	18.34	■□□□□ 0.53
ABR-223	ENST00000573895	NEXN	Q0ZGT2	675 aa		18.34	■□□□□ 0.53
ABR-223	ENST00000573895	TMC4	Q7Z404	712 aa		18.34	■□□□□ 0.53
ABR-223	ENST00000573895	TMX4	Q9H1E5	349 aa	Predicted RBP	18.34	■□□□□ 0.53
ABR-223	ENST00000573895	ATP6V0A2	Q9Y487	856 aa		18.34	■□□□□ 0.53
ABR-223	ENST00000573895	WDR90	Q96KV7	1748 aa		18.34	■□□□□ 0.53
ABR-223	ENST00000573895	TAF1	P21675	1872 aa		18.33	■□□□□ 0.53
ABR-223	ENST00000573895	IRS4	O14654	1257 aa	Predicted RBP	18.33	■□□□□ 0.52
ABR-223	ENST00000573895	FLII	Q13045	1269 aa		18.33	■□□□□ 0.52
ABR-223	ENST00000573895	GRAP	Q13588	217 aa		18.33	■□□□□ 0.52
ABR-223	ENST00000573895	G2E3	Q7L622	706 aa		18.33	■□□□□ 0.52

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