RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 DICER1Q9UPY3 1922 aaKnown RBP39.38■■■■□ 3.9
CTDNEP1-206ENST00000571409 CCDC93Q567U6 631 aa39.38■■■■□ 3.89
CTDNEP1-206ENST00000571409 TOMM70O94826 608 aa39.37■■■■□ 3.89
CTDNEP1-206ENST00000571409 UTP14AQ9BVJ6 771 aaKnown RBP39.37■■■■□ 3.89
CTDNEP1-206ENST00000571409 RRAGCQ9HB90 399 aa39.36■■■■□ 3.89
CTDNEP1-206ENST00000571409 RPGRQ92834 1020 aaKnown RBP39.35■■■■□ 3.89
CTDNEP1-206ENST00000571409 GLTPD2A6NH11 291 aa39.34■■■■□ 3.89
CTDNEP1-206ENST00000571409 TCIRG1Q13488 830 aa39.34■■■■□ 3.89
CTDNEP1-206ENST00000571409 ELL2O00472 640 aaPredicted RBP39.33■■■■□ 3.89
CTDNEP1-206ENST00000571409 OLFM4Q6UX06 510 aa39.33■■■■□ 3.89
CTDNEP1-206ENST00000571409 NLRP10Q86W26 655 aa39.33■■■■□ 3.89
CTDNEP1-206ENST00000571409 HYPKQ9NX55 129 aa39.33■■■■□ 3.89
CTDNEP1-206ENST00000571409 C16orf71Q8IYS4 520 aaPredicted RBP39.32■■■■□ 3.89
CTDNEP1-206ENST00000571409 CCDC27Q2M243 656 aa39.31■■■■□ 3.88
CTDNEP1-206ENST00000571409 PLBD2Q8NHP8 589 aa39.31■■■■□ 3.88
CTDNEP1-206ENST00000571409 HSPA6P17066 643 aa39.3■■■■□ 3.88
CTDNEP1-206ENST00000571409 HOXA10P31260 410 aaPredicted RBP39.3■■■■□ 3.88
CTDNEP1-206ENST00000571409 ANKRD13DQ6ZTN6 518 aa39.3■■■■□ 3.88
CTDNEP1-206ENST00000571409 C3orf67Q6ZVT6 689 aa39.3■■■■□ 3.88
CTDNEP1-206ENST00000571409 RNF123Q5XPI4 1314 aa39.3■■■■□ 3.88
CTDNEP1-206ENST00000571409 C8orf58Q8NAV2 365 aa39.29■■■■□ 3.88
CTDNEP1-206ENST00000571409 NLRP3Q96P20 1036 aa39.29■■■■□ 3.88
CTDNEP1-206ENST00000571409 FKBP4Q02790 459 aaKnown RBP eCLIP39.28■■■■□ 3.88
CTDNEP1-206ENST00000571409 SLC10A5Q5PT55 438 aa39.28■■■■□ 3.88
CTDNEP1-206ENST00000571409 RTKN2Q8IZC4 609 aa39.28■■■■□ 3.88
CTDNEP1-206ENST00000571409 RBM17Q96I25 401 aaKnown RBP39.28■■■■□ 3.88
CTDNEP1-206ENST00000571409 DPY19L2Q6NUT2 758 aa39.27■■■■□ 3.88
CTDNEP1-206ENST00000571409 WWC1Q8IX03 1113 aa39.27■■■■□ 3.88
CTDNEP1-206ENST00000571409 TRMT112Q9UI30 125 aaKnown RBP39.26■■■■□ 3.88
CTDNEP1-206ENST00000571409 RBM46Q8TBY0 533 aaKnown RBP39.25■■■■□ 3.87
CTDNEP1-206ENST00000571409 CRAMP1Q96RY5 1269 aa39.25■■■■□ 3.87
CTDNEP1-206ENST00000571409 TSR2Q969E8 191 aaKnown RBP39.24■■■■□ 3.87
CTDNEP1-206ENST00000571409 ZNF277Q9NRM2 450 aaPredicted RBP39.23■■■■□ 3.87
CTDNEP1-206ENST00000571409 SYNE4Q8N205 404 aa39.22■■■■□ 3.87
CTDNEP1-206ENST00000571409 ZNF428Q96B54 188 aa39.22■■■■□ 3.87
CTDNEP1-206ENST00000571409 LAMB2P55268 1798 aa39.22■■■■□ 3.87
CTDNEP1-206ENST00000571409 SH3TC1Q8TE82 1336 aa39.21■■■■□ 3.87
CTDNEP1-206ENST00000571409 HCLS1P14317 486 aaPredicted RBP39.21■■■■□ 3.87
CTDNEP1-206ENST00000571409 VEGFAP15692 232 aaPredicted RBP39.21■■■■□ 3.87
CTDNEP1-206ENST00000571409 PHAXQ9H814 394 aaKnown RBP39.21■■■■□ 3.87
CTDNEP1-206ENST00000571409 SNED1Q8TER0 1413 aa39.21■■■■□ 3.87
CTDNEP1-206ENST00000571409 WDR90Q96KV7 1748 aa39.2■■■■□ 3.87
CTDNEP1-206ENST00000571409 NCBP3Q53F19 620 aaKnown RBP39.2■■■■□ 3.87
CTDNEP1-206ENST00000571409 CC2D2BQ6DHV5 1058 aa39.2■■■■□ 3.87
CTDNEP1-206ENST00000571409 TSPYL6Q8N831 410 aa39.2■■■■□ 3.87
CTDNEP1-206ENST00000571409 ISCA1Q9BUE6 129 aa39.2■■■■□ 3.87
CTDNEP1-206ENST00000571409 ATP5J2-PTCD1G3V325 749 aa39.19■■■■□ 3.86
CTDNEP1-206ENST00000571409 PPEF1O14829 653 aaPredicted RBP39.19■■■■□ 3.86
CTDNEP1-206ENST00000571409 GOLGA2Q08379 1002 aa39.18■■■■□ 3.86
CTDNEP1-206ENST00000571409 CCDC30Q5VVM6 783 aa39.18■■■■□ 3.86
CTDNEP1-206ENST00000571409 CHMP4AQ9BY43 222 aa39.18■■■■□ 3.86
CTDNEP1-206ENST00000571409 TCERG1O14776 1098 aaKnown RBP39.17■■■■□ 3.86
CTDNEP1-206ENST00000571409 RIC3Q7Z5B4 369 aa39.17■■■■□ 3.86
CTDNEP1-206ENST00000571409 IL16Q14005 1332 aa39.16■■■■□ 3.86
CTDNEP1-206ENST00000571409 PSMD1Q99460 953 aa39.16■■■■□ 3.86
CTDNEP1-206ENST00000571409 IARSP41252 1262 aaKnown RBP39.15■■■■□ 3.86
CTDNEP1-206ENST00000571409 SLC51AQ86UW1 340 aa39.15■■■■□ 3.86
CTDNEP1-206ENST00000571409 SALL2Q9Y467 1007 aaPredicted RBP39.15■■■■□ 3.86
CTDNEP1-206ENST00000571409 ABCC4O15439 1325 aa39.14■■■■□ 3.86
CTDNEP1-206ENST00000571409 POTECB2RU33 542 aa39.14■■■■□ 3.86
CTDNEP1-206ENST00000571409 DDNO94850 711 aaPredicted RBP39.14■■■■□ 3.86
CTDNEP1-206ENST00000571409 FSTL1Q12841 308 aa39.14■■■■□ 3.86
CTDNEP1-206ENST00000571409 DDX60Q8IY21 1712 aaKnown RBP39.14■■■■□ 3.86
CTDNEP1-206ENST00000571409 GRIPAP1Q4V328 841 aa39.12■■■■□ 3.85
CTDNEP1-206ENST00000571409 FAM9BQ8IZU0 186 aa39.12■■■■□ 3.85
CTDNEP1-206ENST00000571409 FAM89AQ96GI7 184 aa39.12■■■■□ 3.85
CTDNEP1-206ENST00000571409 TRIM28Q13263 835 aaKnown RBP39.11■■■■□ 3.85
CTDNEP1-206ENST00000571409 APLP1P51693 650 aa39.09■■■■□ 3.85
CTDNEP1-206ENST00000571409 TWISTNBQ3B726 338 aaPredicted RBP39.09■■■■□ 3.85
CTDNEP1-206ENST00000571409 DDX46Q7L014 1031 aaKnown RBP39.09■■■■□ 3.85
CTDNEP1-206ENST00000571409 SMC1BQ8NDV3 1235 aa39.09■■■■□ 3.85
CTDNEP1-206ENST00000571409 TMX4Q9H1E5 349 aaPredicted RBP39.09■■■■□ 3.85
CTDNEP1-206ENST00000571409 ATP6V0A2Q9Y487 856 aa39.08■■■■□ 3.85
CTDNEP1-206ENST00000571409 DDX58O95786 925 aaKnown RBP39.07■■■■□ 3.85
CTDNEP1-206ENST00000571409 RTL5Q5HYW3 569 aaPredicted RBP39.07■■■■□ 3.85
CTDNEP1-206ENST00000571409 MYD88Q99836 296 aa39.07■■■■□ 3.85
CTDNEP1-206ENST00000571409 ZNF541Q9H0D2 1346 aa39.07■■■■□ 3.84
CTDNEP1-206ENST00000571409 CEP350Q5VT06 3117 aa39.06■■■■□ 3.84
CTDNEP1-206ENST00000571409 WDR63Q8IWG1 891 aa39.06■■■■□ 3.84
CTDNEP1-206ENST00000571409 STK31Q9BXU1 1019 aa39.06■■■■□ 3.84
CTDNEP1-206ENST00000571409 BBOX1O75936 387 aa39.05■■■■□ 3.84
CTDNEP1-206ENST00000571409 JDP2Q8WYK2 163 aa39.05■■■■□ 3.84
CTDNEP1-206ENST00000571409 FANCIQ9NVI1 1328 aa39.05■■■■□ 3.84
CTDNEP1-206ENST00000571409 GRAPQ13588 217 aa39.04■■■■□ 3.84
CTDNEP1-206ENST00000571409 GRAPLQ8TC17 118 aaPredicted RBP39.04■■■■□ 3.84
CTDNEP1-206ENST00000571409 TAF1P21675 1872 aa39.03■■■■□ 3.84
CTDNEP1-206ENST00000571409 FZD9O00144 591 aa39.03■■■■□ 3.84
CTDNEP1-206ENST00000571409 COL4A5P29400 1685 aa39.03■■■■□ 3.84
CTDNEP1-206ENST00000571409 METTL22Q9BUU2 404 aaPredicted RBP39.02■■■■□ 3.84
CTDNEP1-206ENST00000571409 IRS4O14654 1257 aaPredicted RBP39.01■■■■□ 3.84
CTDNEP1-206ENST00000571409 SP8Q8IXZ3 490 aa39.01■■■■□ 3.84
CTDNEP1-206ENST00000571409 ZBTB38Q8NAP3 1195 aaPredicted RBP39.01■■■■□ 3.84
CTDNEP1-206ENST00000571409 L3MBTL3Q96JM7 780 aaPredicted RBP39.01■■■■□ 3.84
CTDNEP1-206ENST00000571409 SF3B3Q15393 1217 aaKnown RBP39■■■■□ 3.83
CTDNEP1-206ENST00000571409 LARGE2Q8N3Y3 721 aa39■■■■□ 3.83
CTDNEP1-206ENST00000571409 CCDC191Q8NCU4 936 aa39■■■■□ 3.83
CTDNEP1-206ENST00000571409 MAP3K2Q9Y2U5 619 aa39■■■■□ 3.83
CTDNEP1-206ENST00000571409 SCN4AP35499 1836 aa38.99■■■■□ 3.83
CTDNEP1-206ENST00000571409 IQCA1LA6NCM1 817 aa38.98■■■■□ 3.83
CTDNEP1-206ENST00000571409 KSR2Q6VAB6 950 aa38.97■■■■□ 3.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms