RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 CEP63Q96MT8 703 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 BRD7Q9NPI1 651 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 KLK14Q9P0G3 267 aa5.95□□□□□ -1.46
VPS39-212ENST00000570023 GDF2Q9UK05 429 aaPredicted RBP5.95□□□□□ -1.46
VPS39-212ENST00000570023 SSFA2P28290 1259 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 DGKZQ13574 1117 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 ZNF326Q5BKZ1 582 aaKnown RBP5.94□□□□□ -1.46
VPS39-212ENST00000570023 ZNF468Q5VIY5 522 aaPredicted RBP5.94□□□□□ -1.46
VPS39-212ENST00000570023 CAPN12Q6ZSI9 719 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 SVOPQ8N4V2 548 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 ARID3AQ99856 593 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 KLF15Q9UIH9 416 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 KCNH4Q9UQ05 1017 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 USTQ9Y2C2 406 aa5.94□□□□□ -1.46
VPS39-212ENST00000570023 ADH6P28332 368 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 INPP5BP32019 993 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 MAP3K10Q02779 954 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 C16orf46Q6P387 395 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 SLCO4C1Q6ZQN7 724 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 C1orf229Q6ZS94 237 aaPredicted RBP5.93□□□□□ -1.46
VPS39-212ENST00000570023 IFT43Q96FT9 208 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 SAP130Q9H0E3 1048 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 C11orf16Q9NQ32 467 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 ENAMQ9NRM1 1142 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 GGA1Q9UJY5 639 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 ADAMTS8Q9UP79 889 aa5.93□□□□□ -1.46
VPS39-212ENST00000570023 MICAL2O94851 1124 aa5.92□□□□□ -1.46
VPS39-212ENST00000570023 GRIN2CQ14957 1233 aa5.92□□□□□ -1.46
VPS39-212ENST00000570023 PHLDB3Q6NSJ2 640 aa5.92□□□□□ -1.46
VPS39-212ENST00000570023 SLC30A3Q99726 388 aa5.92□□□□□ -1.46
VPS39-212ENST00000570023 EFCC1Q9HA90 598 aa5.92□□□□□ -1.46
VPS39-212ENST00000570023 TNFRSF10BO14763 440 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 OPLAHO14841 1288 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 SIN3BO75182 1162 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 EPXP11678 715 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 BRD2P25440 801 aaKnown RBP5.91□□□□□ -1.46
VPS39-212ENST00000570023 GRNP28799 593 aaKnown RBP5.91□□□□□ -1.46
VPS39-212ENST00000570023 IDH3AP50213 366 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 SPEM2Q0P670 501 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 GALNT6Q8NCL4 622 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 EDARADDQ8WWZ3 215 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 MDFIQ99750 246 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 MKNK1Q9BUB5 465 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 PRR12Q9ULL5 1215 aa5.91□□□□□ -1.46
VPS39-212ENST00000570023 NEURL1BA8MQ27 555 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 SHISA8B8ZZ34 492 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 DEKP35659 375 aaKnown RBP5.9□□□□□ -1.46
VPS39-212ENST00000570023 ARSDP51689 593 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 PCBP4P57723 403 aaKnown RBP5.9□□□□□ -1.46
VPS39-212ENST00000570023 NAA30Q147X3 362 aaPredicted RBP5.9□□□□□ -1.46
VPS39-212ENST00000570023 FAM26DQ5JW98 314 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 DIEXFQ68CQ4 756 aaKnown RBP5.9□□□□□ -1.46
VPS39-212ENST00000570023 SYT9Q86SS6 491 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 FCHSD1Q86WN1 690 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 ETFBKMTQ8IXQ9 262 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 GSX2Q9BZM3 304 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 SEPT3Q9UH03 358 aa5.9□□□□□ -1.46
VPS39-212ENST00000570023 DNMT3AQ9Y6K1 912 aaPredicted RBP5.9□□□□□ -1.46
VPS39-212ENST00000570023 CARNS1A5YM72 827 aa5.89□□□□□ -1.47
VPS39-212ENST00000570023 ADARB2-AS1A8MUL3 147 aa5.89□□□□□ -1.47
VPS39-212ENST00000570023 EPB42P16452 691 aa5.89□□□□□ -1.47
VPS39-212ENST00000570023 TREML1Q86YW5 311 aa5.89□□□□□ -1.47
VPS39-212ENST00000570023 STIM2Q9P246 746 aa5.89□□□□□ -1.47
VPS39-212ENST00000570023 EGFRP00533 1210 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 SCNN1AP37088 669 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 AAMPQ13685 434 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 CCINQ13939 588 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 RETREG2Q8NC44 543 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 TNFRSF25Q93038 417 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 BTBD6Q96KE9 485 aa5.88□□□□□ -1.47
VPS39-212ENST00000570023 CDK11AQ9UQ88 783 aaPredicted RBP5.88□□□□□ -1.47
VPS39-212ENST00000570023 MAP3K6O95382 1288 aa5.87□□□□□ -1.47
VPS39-212ENST00000570023 HOXB4P17483 251 aaPredicted RBP5.87□□□□□ -1.47
VPS39-212ENST00000570023 MARSP56192 900 aaKnown RBP5.87□□□□□ -1.47
VPS39-212ENST00000570023 NEDD1Q8NHV4 660 aa5.87□□□□□ -1.47
VPS39-212ENST00000570023 HELQQ8TDG4 1101 aa5.87□□□□□ -1.47
VPS39-212ENST00000570023 RTCBQ9Y3I0 505 aaKnown RBP5.87□□□□□ -1.47
VPS39-212ENST00000570023 FANCIQ9NVI1 1328 aa5.87□□□□□ -1.47
VPS39-212ENST00000570023 ELOA3CA0A087WX78 387 aaPredicted RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 ELOA3DA6NLF2 546 aaPredicted RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 ZBTB39O15060 712 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 NPR3P17342 541 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 KCNMA1Q12791 1236 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 ELOA3BQ3SY89 546 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 B4GALNT3Q6L9W6 998 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 NPM2Q86SE8 214 aaKnown RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 ABTB2Q8N961 1025 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 ELOA3Q8NG57 546 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 GTF3C2Q8WUA4 911 aaPredicted RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 SCARF2Q96GP6 870 aaPredicted RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 CCDC136Q96JN2 1154 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 SUPT16HQ9Y5B9 1047 aaKnown RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.86□□□□□ -1.47
VPS39-212ENST00000570023 KCNMB2Q9Y691 235 aa5.86□□□□□ -1.47
VPS39-212ENST00000570023 ZAP70P43403 619 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 GSK3AP49840 483 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 LINC00114Q6XXX2 140 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 CHSY3Q70JA7 882 aa5.85□□□□□ -1.47
VPS39-212ENST00000570023 RAB44Q7Z6P3 723 aaPredicted RBP5.85□□□□□ -1.47
VPS39-212ENST00000570023 RGL4Q8IZJ4 473 aa5.85□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms