RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 C16orf71Q8IYS4 520 aaPredicted RBP14.12□□□□□ -0.15
VPS39-208ENST00000564994 HOXB7P09629 217 aa14.11□□□□□ -0.15
VPS39-208ENST00000564994 ALDH1B1P30837 517 aa14.11□□□□□ -0.15
VPS39-208ENST00000564994 PARP10Q53GL7 1025 aa14.11□□□□□ -0.15
VPS39-208ENST00000564994 HDGFL1Q5TGJ6 251 aa14.11□□□□□ -0.15
VPS39-208ENST00000564994 SLC51AQ86UW1 340 aa14.11□□□□□ -0.15
VPS39-208ENST00000564994 HOXA10P31260 410 aaPredicted RBP14.1□□□□□ -0.15
VPS39-208ENST00000564994 FKBP4Q02790 459 aaKnown RBP eCLIP14.1□□□□□ -0.15
VPS39-208ENST00000564994 DUSP27Q5VZP5 1158 aa14.1□□□□□ -0.15
VPS39-208ENST00000564994 PPP1R42Q7Z4L9 355 aa14.1□□□□□ -0.15
VPS39-208ENST00000564994 UTP14AQ9BVJ6 771 aaKnown RBP14.1□□□□□ -0.15
VPS39-208ENST00000564994 ZNF277Q9NRM2 450 aaPredicted RBP14.1□□□□□ -0.15
VPS39-208ENST00000564994 IFT57Q9NWB7 429 aa14.1□□□□□ -0.15
VPS39-208ENST00000564994 TAF1P21675 1872 aa14.1□□□□□ -0.15
VPS39-208ENST00000564994 ZNF316A6NFI3 1004 aaPredicted RBP14.09□□□□□ -0.15
VPS39-208ENST00000564994 VEGFAP15692 232 aaPredicted RBP14.09□□□□□ -0.15
VPS39-208ENST00000564994 TCIRG1Q13488 830 aa14.09□□□□□ -0.15
VPS39-208ENST00000564994 SLC10A5Q5PT55 438 aa14.09□□□□□ -0.15
VPS39-208ENST00000564994 NLRP10Q86W26 655 aa14.09□□□□□ -0.15
VPS39-208ENST00000564994 SYNE4Q8N205 404 aa14.09□□□□□ -0.15
VPS39-208ENST00000564994 DDX60Q8IY21 1712 aaKnown RBP14.09□□□□□ -0.15
VPS39-208ENST00000564994 DDNO94850 711 aaPredicted RBP14.08□□□□□ -0.16
VPS39-208ENST00000564994 APLP1P51693 650 aa14.08□□□□□ -0.16
VPS39-208ENST00000564994 FSTL1Q12841 308 aa14.08□□□□□ -0.16
VPS39-208ENST00000564994 HSP90AB3PQ58FF7 597 aa14.08□□□□□ -0.16
VPS39-208ENST00000564994 DPY19L2Q6NUT2 758 aa14.08□□□□□ -0.16
VPS39-208ENST00000564994 RTKN2Q8IZC4 609 aa14.08□□□□□ -0.16
VPS39-208ENST00000564994 RPGRQ92834 1020 aaKnown RBP14.08□□□□□ -0.16
VPS39-208ENST00000564994 DBF4Q9UBU7 674 aaPredicted RBP14.08□□□□□ -0.16
VPS39-208ENST00000564994 COL4A5P29400 1685 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 GNAI1P63096 354 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 PLBD2Q8NHP8 589 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 ZNF428Q96B54 188 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 RBM17Q96I25 401 aaKnown RBP14.07□□□□□ -0.16
VPS39-208ENST00000564994 NLRP3Q96P20 1036 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 CRAMP1Q96RY5 1269 aa14.07□□□□□ -0.16
VPS39-208ENST00000564994 SCN4AP35499 1836 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 ELL2O00472 640 aaPredicted RBP14.06□□□□□ -0.16
VPS39-208ENST00000564994 HCLS1P14317 486 aaPredicted RBP14.06□□□□□ -0.16
VPS39-208ENST00000564994 IARSP41252 1262 aaKnown RBP14.06□□□□□ -0.16
VPS39-208ENST00000564994 HTRA3P83110 453 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 CALD1Q05682 793 aaKnown RBP14.06□□□□□ -0.16
VPS39-208ENST00000564994 ANKRD13DQ6ZTN6 518 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 C8orf58Q8NAV2 365 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 HYPKQ9NX55 129 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 RNF123Q5XPI4 1314 aa14.06□□□□□ -0.16
VPS39-208ENST00000564994 TCERG1O14776 1098 aaKnown RBP14.05□□□□□ -0.16
VPS39-208ENST00000564994 PPEF1O14829 653 aaPredicted RBP14.05□□□□□ -0.16
VPS39-208ENST00000564994 DNAJC5GQ8N7S2 189 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 SMC1BQ8NDV3 1235 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 PSMD1Q99460 953 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 ISCA1Q9BUE6 129 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 TRMT112Q9UI30 125 aaKnown RBP14.05□□□□□ -0.16
VPS39-208ENST00000564994 ABCC4O15439 1325 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 ZNF541Q9H0D2 1346 aa14.05□□□□□ -0.16
VPS39-208ENST00000564994 PCNTO95613 3336 aa14.04□□□□□ -0.16
VPS39-208ENST00000564994 ATP5J2-PTCD1G3V325 749 aa14.04□□□□□ -0.16
VPS39-208ENST00000564994 CC2D2BQ6DHV5 1058 aa14.04□□□□□ -0.16
VPS39-208ENST00000564994 PHAXQ9H814 394 aaKnown RBP14.04□□□□□ -0.16
VPS39-208ENST00000564994 SH3TC1Q8TE82 1336 aa14.04□□□□□ -0.16
VPS39-208ENST00000564994 FZD9O00144 591 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 ANP32CO43423 234 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 POTEIP0CG38 1075 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 POTEJP0CG39 1038 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 CCDC27Q2M243 656 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 TSPYL6Q8N831 410 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 TSR2Q969E8 191 aaKnown RBP14.03□□□□□ -0.16
VPS39-208ENST00000564994 MRS2Q9HD23 443 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 COL4A1P02462 1669 aa14.03□□□□□ -0.16
VPS39-208ENST00000564994 WWC1Q8IX03 1113 aa14.02□□□□□ -0.17
VPS39-208ENST00000564994 FAM89AQ96GI7 184 aa14.02□□□□□ -0.17
VPS39-208ENST00000564994 L3MBTL3Q96JM7 780 aaPredicted RBP14.02□□□□□ -0.17
VPS39-208ENST00000564994 ATP6V0A2Q9Y487 856 aa14.02□□□□□ -0.17
VPS39-208ENST00000564994 TRIM28Q13263 835 aaKnown RBP14.01□□□□□ -0.17
VPS39-208ENST00000564994 LRRC37AA6NMS7 1700 aa14.01□□□□□ -0.17
VPS39-208ENST00000564994 GRIPAP1Q4V328 841 aa14□□□□□ -0.17
VPS39-208ENST00000564994 RTL5Q5HYW3 569 aaPredicted RBP14□□□□□ -0.17
VPS39-208ENST00000564994 RIC3Q7Z5B4 369 aa14□□□□□ -0.17
VPS39-208ENST00000564994 TAF1DQ9H5J8 278 aaPredicted RBP14□□□□□ -0.17
VPS39-208ENST00000564994 ADAMTSL1Q8N6G6 1762 aa14□□□□□ -0.17
VPS39-208ENST00000564994 LTBP1Q14766 1721 aa14□□□□□ -0.17
VPS39-208ENST00000564994 IQCA1LA6NCM1 817 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 BBOX1O75936 387 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 GOLGA2Q08379 1002 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 GRAPQ13588 217 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 CCDC30Q5VVM6 783 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 DDX46Q7L014 1031 aaKnown RBP13.99□□□□□ -0.17
VPS39-208ENST00000564994 SP8Q8IXZ3 490 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 LARGE2Q8N3Y3 721 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 GRAPLQ8TC17 118 aaPredicted RBP13.99□□□□□ -0.17
VPS39-208ENST00000564994 JDP2Q8WYK2 163 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 DUOX1Q9NRD9 1551 aa13.99□□□□□ -0.17
VPS39-208ENST00000564994 SF3B3Q15393 1217 aaKnown RBP13.98□□□□□ -0.17
VPS39-208ENST00000564994 NCBP3Q53F19 620 aaKnown RBP13.98□□□□□ -0.17
VPS39-208ENST00000564994 CHADLQ6NUI6 762 aa13.98□□□□□ -0.17
VPS39-208ENST00000564994 GPC2Q8N158 579 aa13.98□□□□□ -0.17
VPS39-208ENST00000564994 MYD88Q99836 296 aa13.98□□□□□ -0.17
VPS39-208ENST00000564994 RTFDC1Q9BY42 306 aaPredicted RBP13.98□□□□□ -0.17
VPS39-208ENST00000564994 IL16Q14005 1332 aa13.97□□□□□ -0.17
VPS39-208ENST00000564994 CACNA1FO60840 1977 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms