RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 CHMP4AQ9BY43 222 aa15.75■□□□□ 0.11
CLN3-210ENST00000563874 SH2B1Q9NRF2 756 aaPredicted RBP15.75■□□□□ 0.11
CLN3-210ENST00000563874 CACNA1FO60840 1977 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 KDM4FA0A1W2PPD8 638 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 KCNA6P17658 529 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 STK3Q13188 491 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 ZNF530Q6P9A1 599 aaPredicted RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 CKAP2LQ8IYA6 745 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 ZNF710Q8N1W2 664 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 GPATCH3Q96I76 525 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 ZSCAN31Q96LW9 406 aaPredicted RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 TLR7Q9NYK1 1049 aaKnown RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 TFIP11Q9UBB9 837 aaKnown RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 AIMP1Q12904 312 aaKnown RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 MTERF4Q7Z6M4 381 aaKnown RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 EAF2Q96CJ1 260 aaPredicted RBP15.74■□□□□ 0.11
CLN3-210ENST00000563874 EVI5LQ96CN4 794 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 PRIMPOLQ96LW4 560 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 BOLA2Q9H3K6 86 aa15.74■□□□□ 0.11
CLN3-210ENST00000563874 CCDC192P0DO97 292 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 LUZP1Q86V48 1076 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 A0A0D9SFI3 127 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 KLHDC4Q8TBB5 520 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 TM6SF1Q9BZW5 370 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 DBF4Q9UBU7 674 aaPredicted RBP15.73■□□□□ 0.11
CLN3-210ENST00000563874 TBX22Q9Y458 520 aa15.73■□□□□ 0.11
CLN3-210ENST00000563874 KRT85P78386 507 aa15.72■□□□□ 0.11
CLN3-210ENST00000563874 SPTLC3Q9NUV7 552 aa15.72■□□□□ 0.11
CLN3-210ENST00000563874 SLC27A2O14975 620 aa15.72■□□□□ 0.11
CLN3-210ENST00000563874 SASH1O94885 1247 aa15.72■□□□□ 0.11
CLN3-210ENST00000563874 HMGN5P82970 282 aaKnown RBP15.72■□□□□ 0.11
CLN3-210ENST00000563874 MTX1Q13505 466 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 KIAA1524Q8TCG1 905 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 SUCLG2Q96I99 432 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 NUP62CLQ9H1M0 184 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 MAP4K1Q92918 833 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 EDC3Q96F86 508 aaKnown RBP15.71■□□□□ 0.11
CLN3-210ENST00000563874 FSD1Q9BTV5 496 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 BICC1Q9H694 974 aaKnown RBP15.71■□□□□ 0.11
CLN3-210ENST00000563874 DACT1Q9NYF0 836 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 KIF3AQ9Y496 699 aa15.71■□□□□ 0.11
CLN3-210ENST00000563874 IP6K1Q92551 441 aa15.71■□□□□ 0.1
CLN3-210ENST00000563874 HOXB7P09629 217 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 PTGS1P23219 599 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 TYRO3Q06418 890 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 MAP3K11Q16584 847 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 LARP1Q6PKG0 1096 aaKnown RBP15.7■□□□□ 0.1
CLN3-210ENST00000563874 KCNB2Q92953 911 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 N4BP2Q86UW6 1770 aaPredicted RBP15.7■□□□□ 0.1
CLN3-210ENST00000563874 GOLGA6L4A6NEF3 574 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 G3BP1Q13283 466 aaKnown RBP eCLIP15.7■□□□□ 0.1
CLN3-210ENST00000563874 BLOC1S2Q6QNY1 142 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 KSR2Q6VAB6 950 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 KAZALD1Q96I82 304 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 MRVI1Q9Y6F6 885 aa15.7■□□□□ 0.1
CLN3-210ENST00000563874 ZNF589Q86UQ0 364 aaPredicted RBP15.69■□□□□ 0.1
CLN3-210ENST00000563874 ERC1Q8IUD2 1116 aa15.69■□□□□ 0.1
CLN3-210ENST00000563874 CCDC94Q9BW85 323 aaPredicted RBP15.69■□□□□ 0.1
CLN3-210ENST00000563874 FAM200AQ8TCP9 573 aa15.69■□□□□ 0.1
CLN3-210ENST00000563874 NDUFB9Q9Y6M9 179 aa15.69■□□□□ 0.1
CLN3-210ENST00000563874 TNMDQ9H2S6 317 aa15.69■□□□□ 0.1
CLN3-210ENST00000563874 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.68■□□□□ 0.1
CLN3-210ENST00000563874 GIGYF1O75420 1035 aaPredicted RBP15.68■□□□□ 0.1
CLN3-210ENST00000563874 PSMA5P28066 241 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 ANO6Q4KMQ2 910 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 SPATA32Q96LK8 384 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 BCL2L12Q9HB09 334 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 GRM8O00222 908 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 CHGBP05060 677 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 LRMPQ12912 555 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 AKAP4Q5JQC9 854 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 DRC7Q8IY82 874 aa15.68■□□□□ 0.1
CLN3-210ENST00000563874 RIOK3O14730 519 aaKnown RBP15.67■□□□□ 0.1
CLN3-210ENST00000563874 ALDH1L1O75891 902 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 GTF2F1P35269 517 aaKnown RBP eCLIP15.67■□□□□ 0.1
CLN3-210ENST00000563874 TOB2Q14106 344 aaPredicted RBP15.67■□□□□ 0.1
CLN3-210ENST00000563874 DDX11Q96FC9 970 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 NRBP1Q9UHY1 535 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 JAK2O60674 1132 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 CBX1P83916 185 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 PHF8Q9UPP1 1060 aa15.67■□□□□ 0.1
CLN3-210ENST00000563874 GOLGA6L6A8MZA4 724 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 RNMTO43148 476 aaKnown RBP15.66■□□□□ 0.1
CLN3-210ENST00000563874 RPS6KB1P23443 525 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 C1orf141Q5JVX7 400 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 CCDC186Q7Z3E2 898 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 CBX8Q9HC52 389 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 PRDM4Q9UKN5 801 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 PDCP20941 246 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 PLEKHO1Q53GL0 409 aaPredicted RBP15.66■□□□□ 0.1
CLN3-210ENST00000563874 PPP4R3BQ5MIZ7 849 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 CRYBG1Q9Y4K1 1723 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 NR1I2O75469 434 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 RNF20Q5VTR2 975 aa15.66■□□□□ 0.1
CLN3-210ENST00000563874 CEBPZQ03701 1054 aaKnown RBP15.65■□□□□ 0.1
CLN3-210ENST00000563874 CHAF1AQ13111 956 aaPredicted RBP15.65■□□□□ 0.1
CLN3-210ENST00000563874 BICD2Q8TD16 824 aa15.65■□□□□ 0.1
CLN3-210ENST00000563874 LEO1Q8WVC0 666 aaPredicted RBP15.65■□□□□ 0.1
CLN3-210ENST00000563874 TRIM5Q9C035 493 aa15.65■□□□□ 0.1
CLN3-210ENST00000563874 FOSBP53539 338 aa15.65■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms